Escherichia coli UMNK88 |
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Putative Escherichia coli UMNK88 RM systems
Ref: Johnson,T.J. et al. unpublished
REBASE ref # 12833
| Sequence length: | GenBank #: | |
| Chromosome: | 5,186,416 bp | CP002729 |
| plasmid pUMNK88: | 160,573 bp | HQ023862 |
| plasmid pUMNK88_91: | 90,868 bp | CP002731 |
| plasmid pUMNK88_Ent: | 81,475 bp | CP002732 |
| plasmid pUMNK88_Hly: | 65,549 bp | CP002733 |
REBASE acronym: EcoK88
Org_num: 7075
All begin pUMNK88_, UMNK88_, UMNK88_pEnt, UMNK88_pHly, UMNK88_pIncI
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 895 | 75 aa conserved hypothetical protein | |||
| 896 | M | M.EcosW25KORF9360P (100% identity) | GATC | M.EcoK88ORF896P |
| 897 | 273 aa conserved hypothetical protein | |||
| 1704 | 77 aa conserved hypothetical protein | |||
| 1705 | M | M.Eco06K7ORF12570P (98% identity) | GATC | M.EcoK88ORF1705P |
| 1706 | 163 aa hypothetical protein | |||
| 2436 | carboxylate/amino acid/amine transporter protein | |||
| 2435 | V | V.SsoSE61DcmP (100% identity) | V.EcoK88DcmP | |
| 2437 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoK88DcmP |
| 2438 | 231 aa conserved hypothetical protein | |||
| 2939 | 119 aa conserved hypothetical protein | |||
| 2940 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoK88ORF2940P |
| 2941 | 146 aa conserved hypothetical protein | |||
| 3152 | 82 aa conserved hypothetical protein | |||
| 3153 | M | M.Eco3033ORFHP (84% identity) | GATC | M.EcoK88ORF3153P |
| 3154 | 47 aa conserved hypothetical protein | |||
| 3684 | 899 aa conserved hypothetical protein | |||
| 3685 | M | M.EcoH2207ORF4290P (100% identity) | M.EcoK88ORF3685P | |
| 3686 | 366 aa hypothetical protein | |||
| 4021 | bacterial regulatory protein, Fis family | |||
| 4022 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoK88ORF4022P |
| 4023 | 37 aa conserved hypothetical protein | |||
| 4152 | ribulose-phosphate 3-epimerase | |||
| 4153 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoK88DamP |
| 4154 | 428 aa conserved hypothetical protein | |||
| plasmid pUMNK88 | ||||
| 111 | 100 aa conserved hypothetical protein | |||
| 112 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.EcoK88ORF112P |
| 113 | 158 aa conserved hypothetical protein | |||
| plasmid pUMNK88_91 | ||||
| 121 | 103 aa conserved hypothetical protein | |||
| 122 | M | M.SenS380ORF24445P (100% identity) | M.EcoK88ORF122P | |
| 123 | 155 aa conserved hypothetical protein | |||
| plasmid pUMNK88_Ent | ||||
| 3 | 144 aa conserved hypothetical protein | |||
| 4 | M | M.Ecocq9ORF29050P (100% identity) | M.EcoK88ORF4P | |
| 6 | group II intron-encoded reverse transcriptase | |||
| plasmid pUMNK88_Hly | ||||
| 57 | plasmid stability protein StbB | |||
| 58 | M | M.EcosW25KORF26210P (100% identity) | M.EcoK88ORF58P | |
| 59 | 195 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3682 | transposase family protein | |||
| 3683 | R | PmiCZP44MrrP (100% identity) | EcoK88MrrP | |
| 3684 | 899 aa conserved hypothetical protein | |||
| 3689 | 128 aa conserved hypothetical protein | |||
| 3690 | R | SflN97McrCP (100% identity) | EcoK88McrCP | |
| 3691 | R | Kpn0718McrBP (100% identity) | EcoK88McrBP | |
| 3692 | 141 aa conserved hypothetical protein | |||