Escherichia coli FDA strain Seattle 1946 |
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Putative Escherichia coli FDA strain Seattle 1946 RM systems
Ref: Hall,M.B. and Wick,R. bioRxiv (2024) In press
REBASE ref # 38550
Complete sequence: 5,132,220 bp
GenBank #: CP149500
REBASE acronym: EcoM1103
Org_num: 76876
All begin WJ042_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21040 | restriction endonuclease | |||
| 21045 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoM1103ORF21045P |
| 21050 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoM1103ORF21045P |
| 21055 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoM1103ORF21045P |
| 21060 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1805 | cell division protein DamX | |||
| 1810 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoM1103DamP |
| 1815 | ribulose-phosphate 3-epimerase | |||
| 2405 | DUF2556 family protein | |||
| 2410 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoM1103ORF2410P |
| 2415 | DNA-binding transcriptional regulator Fis | |||
| 9855 | phosphohydrolase | |||
| 9860 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoM1103DcmP |
| 9865 | V | V.EcosC25DcmP (100% identity) | CCWGG | V.EcoM1103DcmP |
| 9870 | drug/metabolite exporter YedA | |||
| 21400 | McrC family protein | |||
| 21405 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoM1103ORF21410P |
| 21410 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoM1103ORF21410P |
| 21415 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoM1103ORF21410P |
| 21420 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21035 | BrnT family toxin | |||
| 21040 | R | Ecou021MrrP (100% identity) | EcoM1103MrrP | |
| 21045 | class I SAM-dependent DNA methyltransferase | |||
| 21390 | IS3-like element ISEc52 family transposase | |||
| ??? | R | EcoU15AMcrCP (100% identity) | EcoM1103McrCP | |
| 21405 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14055 | NinE family protein | |||
| 14060 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoM1103ORF14060P |
| 14065 | recombination protein NinB | |||