Escherichia coli Z1323CEC0007 |
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Putative Escherichia coli Z1323CEC0007 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
Complete sequence: 5,190,500 bp
GenBank #: CP148463
REBASE acronym: EcoC0007
Org_num: 76641
All begin WHU58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2915 | endoribonuclease SymE | |||
| 2920 | S | S.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | S.EcoC0007ORF2925P |
| 2925 | M | M.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | M.EcoC0007ORF2925P |
| 2930 | R | Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | EcoC0007ORF2925P |
| 2935 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20 | 318 aa hypothetical protein | |||
| 25 | M | M.EcoSCU109ORF25P (100% identity) | M.EcoC0007ORF25P | |
| 30 | phage portal protein | |||
| 950 | 28 aa hypothetical protein | |||
| 955 | M | M.EcoPEC0001ORF7750P (100% identity) | M.EcoC0007ORF955P | |
| 960 | IS3 family transposase | |||
| 4095 | NinE family protein | |||
| 4100 | M | M.EcoPEC0001ORF4630P (100% identity) | GATC | M.EcoC0007ORF4100P |
| 4105 | recombination protein NinB | |||
| 7735 | TraR/DksA family transcriptional regulator | |||
| 7740 | M | M.EcoPEC0001ORF980P (100% identity) | GATC | M.EcoC0007ORF7740P |
| 7745 | replication endonuclease | |||
| 8725 | DUF977 family protein | |||
| 8730 | M | M.EcoPEC0001ORF215P (100% identity) | M.EcoC0007ORF8730P | |
| 8735 | 84 aa hypothetical protein | |||
| 9690 | phosphohydrolase | |||
| 9695 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoC0007DcmP |
| 9700 | V | V.SdySWHE2DcmP (100% identity) | V.EcoC0007DcmP | |
| 9705 | drug/metabolite exporter YedA | |||
| 10895 | recombination protein NinB | |||
| 10900 | M | M.EcoPEC0001ORF24880P (100% identity) | GATC | M.EcoC0007ORF10900P |
| 10905 | NinE family protein | |||
| 14345 | 60 aa hypothetical protein | |||
| 14350 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoC0007ORF14350P | |
| 14355 | IS3 family transposase | |||
| 15940 | NinE family protein | |||
| 15945 | M | M.EcoPEC0001ORF18680P (100% identity) | GATC | M.EcoC0007ORF15945P |
| 15950 | recombination protein NinB | |||
| 18425 | PerC family transcriptional regulator | |||
| 18430 | M | M.EcoC0014ORF10040P (100% identity) | M.EcoC0007ORF18430P | |
| 18435 | serine/threonine protein phosphatase | |||
| 18685 | PerC family transcriptional regulator | |||
| 18690 | M | M.EcoC0014ORF10040P (100% identity) | M.EcoC0007ORF18690P | |
| 18695 | serine/threonine protein phosphatase | |||
| 22990 | DNA-binding transcriptional regulator Fis | |||
| 22995 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoC0007ORF22995P |
| 23000 | DUF2556 family protein | |||
| 23615 | ribulose-phosphate 3-epimerase | |||
| 23620 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC0007DamP |
| 23625 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2930 | type I restriction-modification system | |||
| 2935 | R | Ssp28760MrrP (100% identity) | EcoC0007MrrP | |
| 2940 | GTPase | |||
| 12120 | tail fiber assembly protein | |||
| 12125 | R | EcoPEC0001McrBP (100% identity) | EcoC0007McrBP | |
| 12130 | R | Ecos15955McrCP (95% identity) | EcoC0007McrCP | |
| 12135 | isocitrate/isopropylmalate family dehydrogenase | |||