Escherichia coli Z1323CEC0004 |
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Putative Escherichia coli Z1323CEC0004 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
| Sequence length: | GenBank #: | |
| Chromosome: | 5,267,256 bp | CP148483 |
| plasmid pZ1323CEC0004-2: | 101,383 bp | CP148484 |
| plasmid pZ1323CEC0004-3: | 66,671 bp | CP148485 |
| plasmid pZ1323CEC0004-5: | 5,650 bp | CP148487 |
REBASE acronym: EcoC0004
Org_num: 76644
All begin WHU49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9915 | inverse autotransporter beta domain-containing | |||
| 9920 | M | M.Sen64034II (100% identity) | AGCNNNNNCTTC | M.EcoC0004ORF9920P |
| 9925 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.EcoC0004ORF9920P |
| 9930 | restriction system-associated AAA family ATPase | |||
| 10965 | 128 aa hypothetical protein | |||
| 10970 | M | M.EcoVEF10ORF18030P (100% identity) | M.EcoC0004ORF10970P | |
| 10975 | S | S1.EcoVEF10ORF18030P (100% identity) | S1.EcoC0004ORF10970P | |
| 10980 | YecA family protein | |||
| 10985 | cold shock domain-containing protein | |||
| 10990 | R | EcoVEF10ORF18030P (100% identity) | EcoC0004ORF10970P | |
| 10995 | S | S2.Ecoa005ORF12540P (100% identity) | S2.EcoC0004ORF10970P | |
| 11000 | IS1-like element transposase | |||
| 23960 | lactate utilization protein C | |||
| 23965 | R | EcoEC107ORF17490P (100% identity) | EcoC0004ORF23975P | |
| 23970 | S | S.EcoEC107ORF17490P (100% identity) | S.EcoC0004ORF23975P | |
| 23975 | M | M.SflFF80ORF4075P (100% identity) | M.EcoC0004ORF23975P | |
| 23980 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2435 | DUF2556 family protein | |||
| 2440 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoC0004ORF2440P |
| 2445 | DNA-binding transcriptional regulator Fis | |||
| 8640 | recombination protein NinB | |||
| 8645 | M | M.EcoCEC0001ORF9655P (100% identity) | GATC | M.EcoC0004ORF8645P |
| 8650 | NinE family protein | |||
| 10305 | TrmB family transcriptional regulator | |||
| 10310 | M | M.EcoS7005ORFLP (100% identity) | M.EcoC0004ORF10310P | |
| 10330 | 39 aa hypothetical protein | |||
| 10620 | hydrolase | |||
| 10625 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoC0004DcmP |
| 10630 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoC0004DcmP |
| 10635 | drug/metabolite exporter YedA | |||
| 15935 | phage lysis protein EssD | |||
| 15940 | M | M.EcoEC0016ORF16045P (100% identity) | M.EcoC0004ORF15940P | |
| 15945 | TrmB family transcriptional regulator | |||
| 17115 | recombination protein NinB | |||
| 17120 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.EcoC0004ORF17120P |
| 17125 | NinE family protein | |||
| plasmid pZ1323CEC0004-2 | ||||
| 26690 | 103 aa hypothetical protein | |||
| 26695 | M | M.EcoSCU488ORF25195P (100% identity) | M.EcoC0004ORF26695P | |
| 26700 | 73 aa hypothetical protein | |||
| plasmid pZ1323CEC0004-3 | ||||
| 27165 | 102 aa hypothetical protein | |||
| 27170 | M | M.Eco8RE02ORF20800P (98% identity) | M.EcoC0004ORF27170P | |
| 27175 | 73 aa hypothetical protein | |||
| plasmid pZ1323CEC0004-5 | ||||
| 27840 | MbeD family mobilization/exclusion protein | |||
| 27845 | M | M.EcoH591ORF4942P (100% identity) | GGYRCC | M.EcoC0004ORF27845P |
| 27850 | R | SenUA39ORF5P (100% identity) | GGYRCC | EcoC0004ORF27845P |