Escherichia coli GN04204 |
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Putative Escherichia coli GN04204 RM systems
Ref: Parsons,J.B. et al. Proc Natl Acad Sci U S A 121 (3), e2314514121 (2024)
REBASE ref # 38499
| Sequence length: | GenBank #: | |
| Chromosome: | 5,115,950 bp | CP147563 |
| plasmid unnamed1: | 105,378 bp | CP147564 |
REBASE acronym: Eco4204
Org_num: 76374
All begin WCU28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18920 | type IV toxin-antitoxin system AbiEi family | |||
| 18925 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco4204ORF18930P |
| 18930 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco4204ORF18930P |
| 18935 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco4204ORF18930P |
| 18940 | 156 aa hypothetical protein | |||
| 21000 | restriction endonuclease | |||
| 21005 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco4204ORF21005P |
| 21010 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco4204ORF21005P |
| 21015 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco4204ORF21005P |
| 21020 | endoribonuclease SymE | |||
| plasmid unnamed1 | ||||
| 25355 | IS1-like element IS1A family transposase | |||
| 25360 | M | M.EcoEC0899ORF26310P (100% identity) | M.Eco4204ORF25360P | |
| 25365 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1695 | cell division protein DamX | |||
| 1700 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4204DamP |
| 1705 | ribulose-phosphate 3-epimerase | |||
| 2295 | DUF2556 family protein | |||
| 2300 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco4204ORF2300P |
| 2305 | DNA-binding transcriptional regulator Fis | |||
| 6670 | DUF1382 family protein | |||
| 6675 | M | M.Esp911AORF3194P (100% identity) | GATC | M.Eco4204ORF6675P |
| 6680 | PerC family transcriptional regulator | |||
| 9820 | phosphohydrolase | |||
| 9825 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco4204DcmP |
| 9830 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco4204DcmP |
| 9835 | drug/metabolite exporter YedA | |||
| 13115 | DUF3927 family protein | |||
| 13130 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco4204ORF13130P |
| 13135 | TrmB family transcriptional regulator | |||
| 15400 | helix-turn-helix transcriptional regulator | |||
| 15405 | M | M.KpnYN1ORFGP (89% identity) | M.Eco4204ORF15405P | |
| 15410 | 71 aa hypothetical protein | |||
| 21360 | McrC family protein | |||
| 21365 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco4204ORF21370P |
| 21370 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco4204ORF21370P |
| 21375 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco4204ORF21370P |
| 21380 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20995 | BrnT family toxin | |||
| 21000 | R | Ecou021MrrP (100% identity) | Eco4204MrrP | |
| 21005 | class I SAM-dependent DNA methyltransferase | |||
| 21345 | glycosyltransferase family 2 protein | |||
| 21350 | R | EcosS3McrBP (100% identity) | Eco4204McrBP | |
| 21355 | IS3-like element ISEc52 family transposase | |||
| 21360 | R | Eco4133McrCP (100% identity) | Eco4204McrCP | |
| 21365 | Alw26I/Eco31I/Esp3I family type II restriction | |||