Escherichia coli GN04979 |
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Putative Escherichia coli GN04979 RM systems
Ref: Parsons,J.B. et al. Proc Natl Acad Sci U S A 121 (3), e2314514121 (2024)
REBASE ref # 38499
Complete sequence: 5,255,581 bp
GenBank #: CP147551
REBASE acronym: Eco79
Org_num: 76375
All begin WCU06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21515 | adenine/cytosine-specific restriction | |||
| 21520 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco79ORF21525P |
| 21525 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.Eco79ORF21525P |
| 21530 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco79ORF21525P |
| 21535 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2025 | cell division protein DamX | |||
| 2030 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco79DamP |
| 2035 | ribulose-phosphate 3-epimerase | |||
| 2625 | DUF2556 family protein | |||
| 2630 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco79ORF2630P |
| 2635 | DNA-binding transcriptional regulator Fis | |||
| 5955 | PerC family transcriptional regulator | |||
| 5960 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.Eco79ORF5960P |
| 5965 | LexA family transcriptional regulator | |||
| 10235 | phosphohydrolase | |||
| 10240 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco79DcmP |
| 10245 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco79DcmP |
| 10250 | drug/metabolite exporter YedA | |||
| 12195 | 72 aa hypothetical protein | |||
| 12200 | M | M.Eco5064ORF12710BP (100% identity) | M.Eco79ORF12200BP | |
| 12205 | M | M.Eco5064ORF12710AP (100% identity) | M.Eco79ORF12200AP | |
| 12210 | 153 aa hypothetical protein | |||
| 14095 | 39 aa hypothetical protein | |||
| 14115 | M | M.SboBSORF1444P (100% identity) | A | M.Eco79ORF14115P |
| 14120 | TrmB family transcriptional regulator | |||
| 21765 | HNH endonuclease | |||
| 21770 | R | Ecoi127aORF4076P (100% identity) | Eco79ORF21770P | |
| 21775 | peptidase | |||
| 22065 | conjugal transfer protein TraG N-terminal | |||
| 22070 | M | M.EcosS3ORF15775P (100% identity) | M.Eco79ORF22070P | |
| 22075 | R | EcosS3ORF15775P (100% identity) | Eco79ORF22070P | |
| 22080 | response regulator receiver domain | |||
| 25190 | helix-turn-helix domain-containing protein | |||
| 25195 | M | M.KaeCRE8ORF15605P (100% identity) | M.Eco79ORF720P | |
| 25200 | 71 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6150 | recombinase family protein | |||
| 6155 | R | EspFAAGmrSDP (100% identity) | Eco79GmrSDP | |
| 6160 | IS5 family transposase | |||
| 21510 | GTPase | |||
| 21515 | R | EcosS1MrrP (100% identity) | Eco79MrrP | |
| 21520 | type I restriction-modification system | |||
| 21535 | endoribonuclease SymE | |||
| ??? | R | EcoUTGmrSD2P (99% identity) | Eco79GmrSD2P | |
| 21550 | Rpn family recombination-promoting | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14980 | NinE family protein | |||
| 14985 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco79ORF14985P |
| 14990 | recombination protein NinB | |||