Escherichia coli GN05056 |
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Putative Escherichia coli GN05056 RM systems
Ref: Parsons,J.B. et al. Proc Natl Acad Sci U S A 121 (3), e2314514121 (2024)
REBASE ref # 38499
| Sequence length: | GenBank #: | |
| Chromosome: | 5,141,929 bp | CP147529 |
| plasmid unnamed2: | 85,636 bp | CP147531 |
REBASE acronym: Eco5056
Org_num: 76376
All begin WCU48_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19125 | type IV toxin-antitoxin system AbiEi family | |||
| 19130 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco5056ORF19135P |
| 19135 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco5056ORF19135P |
| 19140 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco5056ORF19135P |
| 19145 | 156 aa hypothetical protein | |||
| 20940 | restriction endonuclease | |||
| 20945 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco5056ORF20945P |
| 20950 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco5056ORF20945P |
| 20955 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco5056ORF20945P |
| 20960 | endoribonuclease SymE | |||
| plasmid unnamed2 | ||||
| 25245 | type II toxin-antitoxin system Phd/YefM family | |||
| 25250 | M | M.SflFF34ORF9300P (74% identity) | M.Eco5056ORF25250P | |
| 25255 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 480 | BREX-1 system phosphatase PglZ type A | |||
| 485 | RM | EcosR9ORF15335P (100% identity) | CANCATC | Eco5056ORF485P |
| 490 | BREX system P-loop protein BrxC | |||
| 2015 | cell division protein DamX | |||
| 2020 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco5056DamP |
| 2025 | ribulose-phosphate 3-epimerase | |||
| 2615 | DUF2556 family protein | |||
| 2620 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco5056ORF2620P |
| 2625 | DNA-binding transcriptional regulator Fis | |||
| 9800 | phosphohydrolase | |||
| 9805 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco5056DcmP |
| 9810 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco5056DcmP |
| 9815 | drug/metabolite exporter YedA | |||
| 13355 | DUF3927 family protein | |||
| 13370 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco5056ORF13370P |
| 13375 | TrmB family transcriptional regulator | |||
| 15620 | helix-turn-helix transcriptional regulator | |||
| 15625 | M | M.KpnYN1ORFGP (89% identity) | M.Eco5056ORF15625P | |
| 15630 | 71 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 25520 | 73 aa hypothetical protein | |||
| 25525 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco5056ORF25525P |
| 25530 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20935 | BrnT family toxin | |||
| 20940 | R | Ecou021MrrP (100% identity) | Eco5056MrrP | |
| 20945 | class I SAM-dependent DNA methyltransferase | |||
| 21285 | glycosyltransferase family 2 protein | |||
| 21290 | R | EcosS3McrBP (100% identity) | Eco5056McrBP | |
| 21295 | R | EcosS9McrCP (100% identity) | Eco5056McrCP | |
| 21300 | Alw26I/Eco31I/Esp3I family type II restriction | |||