Lachnospiraceae bacterium JLR.KK009 |
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Putative Lachnospiraceae bacterium JLR.KK009 RM systems
Ref: Weis,A. et al. unpublished
REBASE ref # 38394
Complete sequence: 5,268,309 bp
GenBank #: CP143549
REBASE acronym: Lba9
Org_num: 76100
All begin V1226_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16845 | 361 aa hypothetical protein | |||
| 16850 | S | S.EspLV19ORF6845P (43% identity) | S.Lba9ORF16855P | |
| 16855 | M | M.PmeBin235ORFDP (48% identity) | M.Lba9ORF16855P | |
| 16860 | R | Ble28807ORFBP (41% identity) | Lba9ORF16855P | |
| 16865 | molecular chaperone HtpG | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1735 | DUF4366 domain-containing protein | |||
| 1740 | M | M.Csc10422ORF2252P (96% identity) | M.Lba9ORF1740P | |
| 1745 | DNA topoisomerase 3 | |||
| 3745 | helix-hairpin-helix domain-containing protein | |||
| 3750 | M | M.PmeBin69ORFEP (39% identity) | M.Lba9ORF3750P | |
| 3755 | energy-coupled thiamine transporter ThiT | |||
| 4090 | endonuclease III | |||
| 4095 | RM | PmeBin405ORFDP (74% identity) | Lba9ORF4095P | |
| 4100 | 3-5 exonuclease | |||
| 7815 | helix-turn-helix domain-containing protein | |||
| 7820 | RM | Csp502ORF3682P (73% identity) | Lba9ORF7825P | |
| 7825 | M | M.Csp502ORF3683P (78% identity) | M.Lba9ORF7825P | |
| 7830 | ATP-dependent RecD-like DNA helicase | |||
| 8145 | P27 family phage terminase small subunit | |||
| 8150 | M | M1.Epl492ORF1570P (95% identity) | M1.Lba9ORF8150P | |
| 8155 | M | M2.Epl492ORF1570P (95% identity) | M2.Lba9ORF8150P | |
| 8160 | virulence protein | |||
| 9170 | 144 aa hypothetical protein | |||
| 9175 | R | PmeBin190ORFAP (74% identity) | Lba9ORF9180P | |
| 9180 | M | M.PmeBin190ORFAP (80% identity) | M.Lba9ORF9180P | |
| 9185 | helix-turn-helix transcriptional regulator | |||
| 9225 | 121 aa hypothetical protein | |||
| 9230 | V | V.RpeWTDORFBP (90% identity) | V.Lba9ORF9250P | |
| 9235 | R | SspATSA2ORF15880P (63% identity) | R1.Lba9ORF9250P | |
| 9240 | Z1 domain-containing protein | |||
| 9245 | R | R1.BceFT9ORF335P (63% identity) | R2.Lba9ORF9250P | |
| 9250 | M | M.CmiA4758ORF10810P (60% identity) | M.Lba9ORF9250P | |
| 9255 | helix-turn-helix transcriptional regulator | |||
| 10140 | CorA family divalent cation transporter | |||
| 10145 | R | Fpr302ORF3850P (74% identity) | Lba9ORF10150P | |
| 10150 | M | M.Fpr302ORF3850P (75% identity) | M.Lba9ORF10150P | |
| 10155 | tyrosine-type recombinase/integrase | |||
| 17500 | MAE_28990/MAE_18760 family HEPN-like nuclease | |||
| 17505 | R | FinGH31ORF29370P (44% identity) | Lba9ORF17510P | |
| 17510 | M | M.Lsp32ORF28505P (67% identity) | M.Lba9ORF17510P | |
| 17515 | ABC-three component system middle component 1 | |||
| 17525 | MBL fold metallo-hydrolase | |||
| 17530 | R | PmeBin144ORFDP (74% identity) | Lba9ORF17535P | |
| 17535 | M | M1.Sin30303ORF1110P (80% identity) | M1.Lba9ORF17535P | |
| 17540 | M | M2.Sin30303ORF1110P (77% identity) | M2.Lba9ORF17535P | |
| 17545 | acyltransferase | |||
| 21750 | PDDEXK nuclease domain-containing protein | |||
| 21755 | RM | Lba4ORF13970P (76% identity) | Lba9ORF21755P | |
| 21760 | BREX system P-loop protein BrxC | |||
| 24755 | IS110 family transposase | |||
| 24760 | R | PmeBin63ORFDP (82% identity) | Lba9ORF24765P | |
| 24765 | M | M.PmeBin231ORFBP (77% identity) | M.Lba9ORF24765P | |
| 24770 | endonuclease NucS domain-containing protein | |||
| 24815 | 118 aa hypothetical protein | |||
| 24820 | M | M.Aha8ORF16425P (99% identity) | M.Lba9ORF24820P | |
| 24825 | antirestriction protein ArdA | |||
| 25615 | RNA polymerase sigma factor | |||
| 25620 | R | PmeBin79ORFFP (77% identity) | Lba9ORF25625P | |
| 25625 | M | M.Bsp15426ORF14690P (82% identity) | M.Lba9ORF25625P | |
| 25630 | DEAD/DEAH box helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1000 | class I SAM-dependent methyltransferase | |||
| 1005 | R | Rsp499ORF1430P (73% identity) | Lba9ORF1005P | |
| 1010 | S66 peptidase family protein | |||