Escherichia coli S1-THA-01-A |
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Putative Escherichia coli S1-THA-01-A RM systems
Ref: Campos-Madueno,E.I. et al. unpublished
REBASE ref # 38392
| Sequence length: | GenBank #: | |
| Chromosome: | 5,179,132 bp | CP145628 |
| plasmid p1-S1-THA-01-A: | 99,794 bp | CP145629 |
REBASE acronym: EcoA01A
Org_num: 76070
All begin V6S46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17895 | endoribonuclease SymE | |||
| 17900 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoA01AORF17910P |
| 17905 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoA01AORF17910P |
| 17910 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoA01AORF17910P |
| 17915 | restriction endonuclease | |||
| 19985 | 156 aa hypothetical protein | |||
| 19990 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoA01AORF19995P |
| 19995 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoA01AORF19995P |
| 20000 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoA01AORF19995P |
| 20005 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid p1-S1-THA-01-A | ||||
| 26030 | IS1-like element IS1A family transposase | |||
| 26035 | M | M.EcoEC0899ORF26310P (100% identity) | M.EcoA01AORF26035P | |
| 26040 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3480 | drug/metabolite exporter YedA | |||
| 3485 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoA01ADcmP |
| 3490 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoA01ADcmP |
| 3495 | phosphohydrolase | |||
| 6735 | PerC family transcriptional regulator | |||
| 6740 | M | M.Esp911AORF3194P (100% identity) | GATC | M.EcoA01AORF6740P |
| 6745 | DUF1382 family protein | |||
| 11135 | DNA-binding transcriptional regulator Fis | |||
| 11140 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoA01AORF11140P |
| 11145 | DUF2556 family protein | |||
| 12515 | ribulose-phosphate 3-epimerase | |||
| 12520 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoA01ADamP |
| 12525 | cell division protein DamX | |||
| 16155 | conjugal transfer protein TraG N-terminal | |||
| 16160 | M | M.EcosS3ORF15775P (100% identity) | M.EcoA01AORF16160P | |
| 16165 | R | EcosS3ORF15775P (100% identity) | EcoA01AORF16160P | |
| 16170 | response regulator receiver domain | |||
| 17495 | helix-turn-helix domain-containing protein | |||
| 17500 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoA01AORF17500P |
| 17505 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoA01AORF17500P |
| 17510 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoA01AORF17500P |
| 17515 | McrC family protein | |||
| 23105 | 71 aa hypothetical protein | |||
| 23110 | M | M.KpnYN1ORFGP (89% identity) | M.EcoA01AORF23110P | |
| 23115 | helix-turn-helix transcriptional regulator | |||
| 25400 | TrmB family transcriptional regulator | |||
| 25405 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoA01AORF25405P |
| 25420 | DUF3927 family protein | |||
| plasmid p1-S1-THA-01-A | ||||
| 25965 | 73 aa hypothetical protein | |||
| 25970 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoA01AORF25970P |
| 25975 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3565 | integrase arm-type DNA-binding domain-containing | |||
| 3570 | M | M.Ecos164ORF9105P (100% identity) | ATCACC | M.EcoA01AORF3570P |
| 3575 | R | Ecos164ORF9105P (100% identity) | ATCACC | EcoA01AORF3570P |
| 3580 | type 4 pilus major pilin | |||