Escherichia coli S1-NGR-02-A |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli S1-NGR-02-A RM systems
Ref: Campos-Madueno,E.I. et al. unpublished
REBASE ref # 38392
| Sequence length: | GenBank #: | |
| Chromosome: | 5,030,726 bp | CP145679 |
| plasmid p1-S1-NGR-02-A: | 113,912 bp | CP145680 |
| plasmid p2-S1-NGR-02-A: | 113,079 bp | CP145681 |
| plasmid p3-S1-NGR-02-A: | 101,620 bp | CP145682 |
REBASE acronym: EcoGR02A
Org_num: 76067
All begin V6S33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1590 | IS66 family transposase | |||
| 1595 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | EcoGR02AORF1600P |
| 1600 | M | M.Eco504239ORFEP (100% identity) | GAACNNNNNTGC | M.EcoGR02AORF1600P |
| 1605 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.EcoGR02AORF1600P |
| 1610 | 48 aa hypothetical protein | |||
| 2810 | endoribonuclease SymE | |||
| 2815 | S | S2.Ecos671ORFCP (100% identity) | S2.EcoGR02AORF2830P | |
| 2820 | IS3-like element IS3 family transposase | |||
| 2825 | S | S1.Ecos671ORFCP (100% identity) | S1.EcoGR02AORF2830P | |
| 2830 | M | M.Ecos671ORFCP (100% identity) | M.EcoGR02AORF2830P | |
| 2835 | R | Ecos671ORFCP (100% identity) | EcoGR02AORF2830P | |
| 2840 | adenine/cytosine-specific restriction | |||
| 17535 | restriction system-associated AAA family ATPase | |||
| 17540 | S | S.Ecos671ORFGP (100% identity) | GTANNNNNNGTCG | S.EcoGR02AORF17545P |
| 17545 | M | M.Ecos671ORFGP (100% identity) | GTANNNNNNGTCG | M.EcoGR02AORF17545P |
| 17550 | R | Ecos671ORFGP (96% identity) | GTANNNNNNGTCG | EcoGR02AORF17545P |
| 17555 | TIGR03761 family integrating conjugative element | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9235 | replication protein P | |||
| 9240 | M | M.EcoMSI001ORF17885P (100% identity) | M.EcoGR02AORF9240P | |
| 9245 | 343 aa hypothetical protein | |||
| 13725 | drug/metabolite exporter YedA | |||
| 13730 | V | V.SflFF59DcmP (100% identity) | CCWGG | V.EcoGR02ADcmP |
| 13735 | M | M.SflFF59DcmP (100% identity) | CCWGG | M.EcoGR02ADcmP |
| 13740 | phosphohydrolase | |||
| 21015 | DNA-binding transcriptional regulator Fis | |||
| 21020 | M | M.Ecos671ORFEP (100% identity) | ATGCAT | M.EcoGR02AORF21020P |
| 21025 | DUF2556 family protein | |||
| 21640 | ribulose-phosphate 3-epimerase | |||
| 21645 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoGR02ADamP |
| 21650 | cell division protein DamX | |||
| plasmid p1-S1-NGR-02-A | ||||
| 24900 | 73 aa hypothetical protein | |||
| 24905 | M | M.SflP099ORF24775P (100% identity) | M.EcoGR02AORF24905P | |
| 24910 | 101 aa hypothetical protein | |||
| plasmid p2-S1-NGR-02-A | ||||
| 25860 | 76 aa hypothetical protein | |||
| 25865 | M | M.EcoS0225ORF24340P (100% identity) | GATC | M.EcoGR02AORF25865P |
| 25870 | 269 aa hypothetical protein | |||
| plasmid p3-S1-NGR-02-A | ||||
| 26280 | plasmid SOS inhibition protein A | |||
| ??? | M | M.Ecos671ORFHP (100% identity) | M.EcoGR02AORF26285P | |
| 26295 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19390 | integrase arm-type DNA-binding domain-containing | |||
| 19395 | M | M.EcoS6685ORFCP (96% identity) | M.EcoGR02AORF19395P | |
| 19400 | R | EcoS6685ORFCP (100% identity) | EcoGR02AORF19395P | |
| 19405 | 269 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2835 | type I restriction-modification system | |||
| 2840 | R | Eco8S13MrrP (100% identity) | EcoGR02AMrrP | |
| 2845 | GTPase | |||
| 9300 | tail fiber assembly protein | |||
| 9305 | R | EcoE562McrBP (100% identity) | EcoGR02AMcrBP | |
| 9310 | R | Ecos671McrCP (95% identity) | EcoGR02AMcrCP | |
| 9315 | isocitrate/isopropylmalate family dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7600 | TraR/DksA family transcriptional regulator | |||
| 7605 | M | M.Ecos671ORFBP (100% identity) | GATC | M.EcoGR02AORF7605P |
| 7610 | replication endonuclease | |||