Escherichia coli REF1 |
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Putative Escherichia coli REF1 RM systems
Ref: Karami,N. et al. unpublished
REBASE ref # 38216
| Sequence length: | GenBank #: | |
| Chromosome: | 5,118,192 bp | CP107234 |
| plasmid pREF1-18-1: | 163,870 bp | CP107235 |
| plasmid pREF1-18-2: | 93,794 bp | CP107236 |
REBASE acronym: EcoREF1
Org_num: 75260
All begin OGY64_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20000 | endoribonuclease SymE | |||
| 20005 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoREF1ORF20015P |
| 20010 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoREF1ORF20015P |
| 20015 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoREF1ORF20015P |
| 20020 | restriction endonuclease | |||
| 21820 | ash family protein | |||
| 21825 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoREF1ORF21830P |
| 21830 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoREF1ORF21830P |
| 21835 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoREF1ORF21830P |
| 21840 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 420 | 71 aa hypothetical protein | |||
| 425 | M | M.KpnYN1ORFGP (89% identity) | M.EcoREF1ORF425P | |
| 430 | helix-turn-helix domain-containing protein | |||
| 2690 | TrmB family transcriptional regulator | |||
| 2695 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoREF1ORF2695P |
| 2710 | DUF3927 family protein | |||
| 6240 | drug/metabolite exporter YedA | |||
| 6245 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoREF1DcmP |
| 6250 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoREF1DcmP |
| 6255 | phosphohydrolase | |||
| 13590 | DNA-binding transcriptional regulator Fis | |||
| 13595 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoREF1ORF13595P |
| 13600 | DUF2556 family protein | |||
| 14190 | ribulose-phosphate 3-epimerase | |||
| 14195 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoREF1DamP |
| 14200 | cell division protein DamX | |||
| 15710 | BREX system P-loop protein BrxC | |||
| 15715 | RM | EcosR9ORF15335P (100% identity) | CANCATC | EcoREF1ORF15715P |
| 15720 | BREX-1 system phosphatase PglZ type A | |||
| 19640 | helix-turn-helix domain-containing protein | |||
| 19645 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoREF1ORF19645P |
| 19650 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoREF1ORF19645P |
| 19655 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoREF1ORF19645P |
| 19660 | McrC family protein | |||
| plasmid pREF1-18-1 | ||||
| 25930 | 73 aa hypothetical protein | |||
| 25935 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoREF1ORF25935P |
| 25940 | 103 aa hypothetical protein | |||
| plasmid pREF1-18-2 | ||||
| 26245 | 103 aa hypothetical protein | |||
| 26250 | M | M.Eco558ORF26820P (100% identity) | M.EcoREF1ORF26250P | |
| 26255 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19655 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 19660 | R | EcosS9McrCP (100% identity) | EcoREF1McrCP | |
| 19665 | DUF2079 domain-containing protein | |||
| 19670 | IS3-like element ISEc52 family transposase | |||
| 19675 | IS3-like element ISEc52 family transposase | |||
| 19680 | R | EcosS3McrBP (69% identity) | EcoREF1McrBP | |
| 19685 | glycosyltransferase | |||
| 20015 | type I restriction-modification system subunit | |||
| 20020 | R | Ecou021MrrP (100% identity) | EcoREF1MrrP | |
| 20025 | BrnT family toxin | |||