Escherichia coli isolate Reference |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli isolate Reference RM systems
Ref: Hendriksen,R. et al. unpublished
REBASE ref # 36348
| Sequence length: | GenBank #: | |
| chromosome GPT21-003_1: | 4,762,808 bp | OY754834 |
| chromosome GPT21-004_1: | 5,533,260 bp | OY754853 |
| plasmid pGPT21-003_3: | 42,576 bp | OY754837 |
| plasmid pGPT21-004_2: | 6,715 bp | OY754855 |
REBASE acronym:
Org_num:
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome GPT21-003_1 | ||||
| ??? | M | M.Efe1ORFEP (99% identity) | M.Eco0031ORFEP | |
| ??? | S | S.KpnSC7ORF480P (87% identity) | S.Eco0031ORFEP | |
| ??? | R | Cfr2075ORF19015P (99% identity) | Eco0031ORFEP | |
| chromosome GPT21-004_1 | ||||
| ??? | R | EcosLF82ORF3455P (100% identity) | TACNNNNNNNRTRTC | Eco10041ORFFP |
| ??? | M | M.Eco4639ORFFP (100% identity) | TACNNNNNNNRTRTC | M.Eco10041ORFFP |
| ??? | S | S.EcoSTEC508ORF24455P (100% identity) | TACNNNNNNNRTRTC | S.Eco10041ORFFP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome GPT21-003_1 | ||||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco0031DamP |
| ??? | M | M.Ecoww7ORF17400P (100% identity) | ATGCAT | M.Eco0031ORFCP |
| ??? | M | M.EcosPA11DcmP (99% identity) | CCWGG | M.Eco0031DcmP |
| ??? | V | V.EcoA9DcmP (99% identity) | V.Eco0031DcmP | |
| ??? | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco0031ORFDP |
| chromosome GPT21-004_1 | ||||
| ??? | M | M.SflN97ORF15810P (100% identity) | GATC | M.Eco10041ORFBP |
| ??? | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco10041DcmP |
| ??? | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco10041DcmP |
| ??? | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco10041ORFCP |
| ??? | M | M.EcoSO179ORF21175P (100% identity) | M.Eco10041ORFEP | |
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco10041DamP |
| ??? | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco10041ORFGP |
| plasmid pGPT21-003_3 | ||||
| ??? | RM | SenTS3ORF23915P (76% identity) | Eco0031ORFBP | |
| plasmid pGPT21-004_2 | ||||
| ??? | M | M.Sen64991ORFAP (82% identity) | M.Eco10041ORFDP | |
| ??? | R | Sen64991ORFAP (100% identity) | GRCGYC | Eco10041ORFDP |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome GPT21-004_1 | ||||
| ??? | R | EcoSTEC508GmrSDP (100% identity) | Eco10041GmrSDP | |