Xanthomonas campestris pv. campestris WHRI 10018A |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xanthomonas campestris pv. campestris WHRI 10018A RM systems
Ref: Hussain,R.M.F. et al. unpublished
REBASE ref # 38361
Complete sequence: 5,078,887 bp
GenBank #: CP142008
REBASE acronym: XcaA
Org_num: 75853
All begin VDR36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6040 | SprT family zinc-dependent metalloprotease | |||
| 6045 | R | XcaYORFCP (95% identity) | CAAGNNNNNCTTA | XcaAORF6060P |
| 6050 | S | S.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | S.XcaAORF6060P |
| 6055 | BRO family protein | |||
| 6060 | M | M.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | M.XcaAORF6060P |
| 6065 | restriction endonuclease subunit S | |||
| 16205 | 98 aa hypothetical protein | |||
| 16210 | R | XcaYORFFP (87% identity) | GAGNNNNNNGTGC | XcaAORF16225P |
| 16215 | S | S.Xcacc2ORF16555P (100% identity) | GAGNNNNNNGTGC | S.XcaAORF16225P |
| 16220 | virulence RhuM family protein | |||
| 16225 | M | M.XcaYORFFP (100% identity) | GAGNNNNNNGTGC | M.XcaAORF16225P |
| 16230 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3035 | 297 aa hypothetical protein | |||
| ??? | R | Xca108GORF11435P (48% identity) | XcaAORF3045P | |
| 3050 | 90 aa hypothetical protein | |||
| 5150 | XVIPCD domain-containing protein | |||
| 5155 | RM | Xca6943ORF3120P (100% identity) | XcaAORF5155P | |
| 5160 | DEAD/DEAH box helicase | |||
| 11765 | AAA family ATPase | |||
| 11770 | M | M.XcaYORFEP (48% identity) | M.XcaAORF11770P | |
| 11775 | DNA topoisomerase III | |||
| 11825 | IS3-like element IS476 family transposase | |||
| 11830 | RM | XcaSB80ORF10635P (100% identity) | XcaAORF11830P | |
| 11835 | pseudomurein-binding repeat-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21950 | RluA family pseudouridine synthase | |||
| 21955 | R | XcaYMrr2P (90% identity) | XcaAMrr2P | |
| 21960 | topoisomerase DNA-binding C4 zinc finger | |||