Xanthomonas campestris pv. campestris WHRI 6056 |
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Putative Xanthomonas campestris pv. campestris WHRI 6056 RM systems
Ref: Hussain,R.M.F. et al. unpublished
REBASE ref # 38361
Complete sequence: 5,024,041 bp
GenBank #: CP142006
REBASE acronym: Xca6056
Org_num: 75854
All begin VDQ57_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6125 | SprT family zinc-dependent metalloprotease | |||
| 6130 | R | Xca6066ORF6205P (99% identity) | Xca6056ORF6150P | |
| 6135 | S | S.XcaCN18ORFCP (100% identity) | S2.Xca6056ORF6150P | |
| 6140 | S | S1.Xca8497ORF6285P (100% identity) | S1.Xca6056ORF6150P | |
| 6145 | BRO family protein | |||
| 6150 | M | M.Xcacc2ORF6130P (100% identity) | M.Xca6056ORF6150P | |
| 6155 | restriction endonuclease subunit S | |||
| 15920 | 98 aa hypothetical protein | |||
| 15925 | R | Xca12825ORF16330P (97% identity) | GAGNNNNNNGTGC | Xca6056ORF15940P |
| 15930 | S | S.Xca6066ORF16170P (100% identity) | GAGNNNNNNGTGC | S.Xca6056ORF15940P |
| 15935 | virulence RhuM family protein | |||
| 15940 | M | M.Xca6066ORF16170P (100% identity) | GAGNNNNNNGTGC | M.Xca6056ORF15940P |
| 15945 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3040 | pyruvate dehydrogenase (acetyl-transferring), | |||
| 3045 | M | M.Xca6066ORF3055AP (100% identity) | M.Xca6056ORF3045AP | |
| 3050 | M | M.Xca12825ORF3535P (25% identity) | M.Xca6056ORF3045BP | |
| 3055 | AAA family ATPase | |||
| 5190 | XVIPCD domain-containing protein | |||
| 5195 | RM | XcaAORF5155P (71% identity) | Xca6056ORF5195AP | |
| 5200 | IS3-like element IS476 family transposase | |||
| 5205 | RM | XcaAORF5155P (26% identity) | Xca6056ORF5195BP | |
| 5210 | DEAD/DEAH box helicase | |||
| 21910 | 170 aa hypothetical protein | |||
| 21915 | M | M.XcaSB80ORF22350P (87% identity) | M.Xca6056ORF21915P | |
| 21920 | exodeoxyribonuclease V subunit beta | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3050 | DNA cytosine methyltransferase | |||
| 3055 | R | Xca6056McrB3P (100% identity) | Xca6056McrB2P | |
| 3060 | R | Xca6066McrC3P (100% identity) | Xca6056McrC2P | |
| 3065 | transposase | |||
| 3050 | DNA cytosine methyltransferase | |||
| 3055 | R | Xca6056McrB2P (100% identity) | Xca6056McrB3P | |
| 3060 | R | Xca6066McrC3P (100% identity) | Xca6056McrC3P | |
| 3065 | transposase | |||
| 12875 | IS3 family transposase | |||
| 12880 | R | Xca6066MrrP (100% identity) | Xca6056MrrP | |
| 12885 | NYN domain-containing protein | |||
| 15940 | class I SAM-dependent DNA methyltransferase | |||
| 15945 | R | Xca6066Mrr2P (100% identity) | Xca6056Mrr2P | |
| 15950 | type II toxin-antitoxin system RelE/ParE family | |||
| 21875 | RluA family pseudouridine synthase | |||
| 21880 | R | Xca6066Mrr4P (99% identity) | Xca6056Mrr3P | |
| 21885 | peptidoglycan-binding domain-containing protein | |||