Escherichia coli Case 1 |
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Putative Escherichia coli Case 1 RM systems
Ref: Hans,J.B. unpublished
REBASE ref # 38132
Complete sequence: 4,747,990 bp
GenBank #: CP142437
REBASE acronym: EcoCase1
Org_num: 74030
All begin VUP56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10690 | DUF262 domain-containing HNH endonuclease family | |||
| 10695 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | EcoCase1ORF10700P |
| 10700 | M | M.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | M.EcoCase1ORF10700P |
| 10705 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.EcoCase1ORF10700P |
| 10710 | endoribonuclease SymE | |||
| 14400 | sce7726 family protein | |||
| 14405 | R | EcoCase6ORF480P (100% identity) | CAAYNNNNNCTGC | EcoCase1ORF14410P |
| 14410 | M | M.SflN116ORF3940P (100% identity) | CAAYNNNNNCTGC | M.EcoCase1ORF14410P |
| 14415 | S | S.SflN116ORF3940P (100% identity) | CAAYNNNNNCTGC | S.EcoCase1ORF14410P |
| 14420 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 325 | phosphohydrolase | |||
| 330 | M | M.EcoteDDcmP (100% identity) | CCWGG | M.EcoCase1DcmP |
| 335 | V | V.SsoST152DcmP (100% identity) | CCWGG | V.EcoCase1DcmP |
| 340 | drug/metabolite exporter YedA | |||
| 16255 | cell division protein DamX | |||
| 16260 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCase1DamP |
| 16265 | ribulose-phosphate 3-epimerase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10710 | endoribonuclease SymE | |||
| ??? | R | EcoC213GmrDP (100% identity) | EcoCase1GmrSDP | |
| 10725 | cytoplasmic protein | |||