Escherichia coli ExPEC_A98 |
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Putative Escherichia coli ExPEC_A98 RM systems
Ref: Li,X. et al. unpublished
REBASE ref # 38134
| Sequence length: | GenBank #: | |
| Chromosome: | 4,810,000 bp | CP142583 |
| plasmid pA98_p1: | 103,371 bp | CP142585 |
| plasmid pA98_p2: | 83,927 bp | CP142586 |
| plasmid pA98_p3: | 103,784 bp | CP142587 |
| plasmid pA98_p4: | 126,853 bp | CP142588 |
REBASE acronym: EcoA98
Org_num: 74056
All begin SNC07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16925 | integrase core domain-containing protein | |||
| 16930 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoA98ORF16930P |
| 16935 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoA98ORF16930P |
| 16940 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoA98ORF16930P |
| 16945 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6015 | TrmB family transcriptional regulator | |||
| 6020 | M | M.EcosE1ORFAP (100% identity) | M.EcoA98ORF6020P | |
| 6025 | 63 aa hypothetical protein | |||
| 13510 | drug/metabolite exporter YedA | |||
| 13515 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoA98DcmP |
| 13520 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoA98DcmP |
| 13525 | phosphohydrolase | |||
| 20765 | ribulose-phosphate 3-epimerase | |||
| 20770 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoA98DamP |
| 20775 | cell division protein DamX | |||
| 22790 | holin | |||
| 22795 | M | M.EcoO783ORF220P (100% identity) | M.EcoA98ORF22795P | |
| 22800 | 401 aa hypothetical protein | |||
| plasmid pA98_p1 | ||||
| 24690 | 73 aa hypothetical protein | |||
| 24695 | M | M.Xca80ORFEP (100% identity) | M.EcoA98ORF24695P | |
| 24700 | 97 aa hypothetical protein | |||
| plasmid pA98_p2 | ||||
| 25340 | 73 aa hypothetical protein | |||
| 25345 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoA98ORF25345P |
| 25350 | 103 aa hypothetical protein | |||
| plasmid pA98_p3 | ||||
| 26235 | 73 aa hypothetical protein | |||
| 26240 | M | M.StyR64ORFAP (100% identity) | M.EcoA98ORF26240P | |
| 26245 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pA98_p1 | ||||
| 24805 | 67 aa hypothetical protein | |||
| 24810 | M | M.SspS13ORF650P (100% identity) | M.EcoA98ORF24810P | |
| 24815 | R | SspS13ORF650P (100% identity) | EcoA98ORF24810P | |
| 24820 | mobilization protein MobX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9465 | recombinase family protein | |||
| 9470 | R | EcoteDMcrBP (100% identity) | EcoA98McrBP | |
| 9475 | R | EmaE2C08McrCP (100% identity) | EcoA98McrCP | |
| 9480 | isocitrate/isopropylmalate family dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7910 | TraR/DksA family transcriptional regulator | |||
| 7915 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoA98ORF7915P |
| 7920 | replication endonuclease | |||
| plasmid pA98_p4 | ||||
| 26840 | 76 aa hypothetical protein | |||
| 26845 | M | M.Ecoppa6ORF24465P (100% identity) | GATC | M.EcoA98ORF26845P |
| 26850 | 269 aa hypothetical protein | |||