Escherichia coli T-HYM1 |
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Putative Escherichia coli T-HYM1 RM systems
Ref: Zhao,Q.-Y. unpublished
REBASE ref # 37423
| Sequence length: | GenBank #: | |
| Chromosome: | 5,018,025 bp | CP141767 |
| plasmid p1-T-HYM1: | 104,341 bp | CP141768 |
REBASE acronym: EcoTHYM1
Org_num: 73852
All begin U8328_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4160 | transposase | |||
| 4165 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoTHYM1ORF4170P |
| 4170 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoTHYM1ORF4170P |
| 4175 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoTHYM1ORF4170P |
| 4180 | AAA family ATPase | |||
| 20975 | DUF262 domain-containing protein | |||
| 20980 | M | M.Ecos135ORF4680P (100% identity) | M.EcoTHYM1ORF20980P | |
| 20985 | S | S.EcoHYM1ORF13930P (100% identity) | S.EcoTHYM1ORF20980P | |
| 20990 | R | EcoHYM1ORF13930P (100% identity) | EcoTHYM1ORF20980P | |
| 20995 | 237 aa hypothetical protein | |||
| plasmid p1-T-HYM1 | ||||
| 24515 | 3-phosphatase | |||
| 24520 | R | KpnLL83ORF1P (100% identity) | EcoTHYM1ORF24530P | |
| 24525 | S | S.SspS13ORF175P (100% identity) | S.EcoTHYM1ORF24530P | |
| 24530 | M | M.SspS13ORF175P (100% identity) | M.EcoTHYM1ORF24530P | |
| 24535 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1790 | cell division protein DamX | |||
| 1795 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoTHYM1DamP |
| 1800 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 family protein | |||
| 2350 | M | M.Fnu048ORFDP (100% identity) | ATGCAT | M.EcoTHYM1ORF2350P |
| 2355 | DNA-binding transcriptional regulator Fis | |||
| 7430 | PerC family transcriptional regulator | |||
| 7435 | M | M.Ecos135ORF19235P (100% identity) | GATC | M.EcoTHYM1ORF7435P |
| 7440 | LexA family transcriptional regulator | |||
| 9815 | phosphohydrolase | |||
| 9820 | M | M.Ecos135DcmP (100% identity) | CCWGG | M.EcoTHYM1DcmP |
| 9825 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoTHYM1DcmP |
| 9830 | drug/metabolite exporter YedA | |||
| 17850 | DUF1317 family protein | |||
| 17855 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoTHYM1ORF17855P |
| 17860 | cell division protein ZapA | |||
| 21205 | RM | EcoHYM1ORF13705P (100% identity) | EcoTHYM1ORF21205P | |
| 21210 | DEAD/DEAH box helicase | |||
| plasmid p1-T-HYM1 | ||||
| 24405 | recombination-associated protein RdgC | |||
| 24410 | M | M.KpnLL83ORF28P (100% identity) | M.EcoTHYM1ORF24410P | |
| 24425 | tellurite/colicin resistance protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20965 | cell filamentation protein Fic | |||
| ??? | R | EcoR47GmrDP (100% identity) | EcoTHYM1GmrSDP | |
| 20980 | class I SAM-dependent DNA methyltransferase | |||