Escherichia coli KE40 |
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Putative Escherichia coli KE40 RM systems
Ref: Hogins,J. et al. unpublished
REBASE ref # 37990
| Sequence length: | GenBank #: | |
| Chromosome: | 5,154,153 bp | CP141100 |
| plasmid unnamed1: | 151,962 bp | CP141101 |
REBASE acronym: EcoKE40
Org_num: 73577
All begin U8P28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2730 | endoribonuclease SymE | |||
| 2735 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoKE40ORF2740P |
| 2740 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoKE40ORF2740P |
| 2745 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoKE40ORF2740P |
| 2750 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7625 | recombination protein NinB | |||
| 7630 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoKE40ORF7630P |
| 7635 | NinE family protein | |||
| 9755 | recombination protein NinB | |||
| 9760 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoKE40ORF9760P |
| 9765 | NinE family protein | |||
| 10670 | TrmB family transcriptional regulator | |||
| 10675 | M | M.SsoCS14ORF10750P (100% identity) | A | M.EcoKE40ORF10675P |
| 10695 | 39 aa hypothetical protein | |||
| 14150 | RusA family crossover junction | |||
| 14155 | M | M.EcoSCU482ORF21135P (100% identity) | GATC | M.EcoKE40ORF14155P |
| 14160 | PerC family transcriptional regulator | |||
| 14695 | drug/metabolite exporter YedA | |||
| 14700 | V | V.Fnu048DcmP (100% identity) | V.EcoKE40DcmP | |
| 14705 | M | M.Fnu048DcmP (100% identity) | CCWGG | M.EcoKE40DcmP |
| 14710 | phosphohydrolase | |||
| 22105 | DNA-binding transcriptional regulator Fis | |||
| 22110 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoKE40ORF22110P |
| 22115 | DUF2556 family protein | |||
| 22635 | ribulose-phosphate 3-epimerase | |||
| 22640 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoKE40DamP |
| 22645 | cell division protein DamX | |||
| plasmid unnamed1 | ||||
| 25880 | 73 aa hypothetical protein | |||
| 25885 | M | M.Ecowhn14ORF35P (100% identity) | M.EcoKE40ORF25885P | |
| 25890 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2745 | type I restriction-modification system | |||
| 2750 | R | Ssp28760MrrP (100% identity) | EcoKE40MrrP | |
| 2755 | GTPase | |||