Escherichia coli EC147566 |
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Putative Escherichia coli EC147566 RM systems
Ref: Li,W. et al. unpublished
REBASE ref # 37946
Complete sequence: 4,876,676 bp
GenBank #: CP139360
REBASE acronym: Eco566
Org_num: 73385
All begin SM146_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5805 | IS1 family transposase | |||
| 5810 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco566ORF5820P |
| 5815 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco566ORF5820P |
| 5820 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco566ORF5820P |
| 5825 | integrase core domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1965 | cell division protein DamX | |||
| 1970 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco566DamP |
| 1975 | ribulose-phosphate 3-epimerase | |||
| 2605 | DUF2556 family protein | |||
| 2610 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco566ORF2610P |
| 2615 | DNA-binding transcriptional regulator Fis | |||
| 9640 | phosphohydrolase | |||
| 9645 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco566DcmP |
| 9650 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco566DcmP |
| 9655 | drug/metabolite exporter YedA | |||
| 17145 | 63 aa hypothetical protein | |||
| 17150 | M | M.EcoWW2ORF16975P (100% identity) | M.Eco566ORF17150P | |
| 17155 | TrmB family transcriptional regulator | |||
| 19955 | LexA family transcriptional regulator | |||
| 19960 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco566ORF19960P |
| 19965 | PerC family transcriptional regulator | |||
| 20665 | osmoprotectant transport activator ProQ | |||
| 20670 | M | M.SflFF24DndBP (100% identity) | M.Eco566DndBP | |
| 20675 | DNA phosphorothioation system sulfurtransferase | |||
| 20670 | DNA sulfur modification protein DndB | |||
| 20675 | M | M.SflFF24DndCP (100% identity) | M.Eco566DndCP | |
| 20680 | DNA sulfur modification protein DndD | |||
| 20675 | DNA phosphorothioation system sulfurtransferase | |||
| 20680 | M | M.Econumer3DndDP (100% identity) | M.Eco566DndDP | |
| 20685 | DNA sulfur modification protein DndE | |||
| 20680 | DNA sulfur modification protein DndD | |||
| 20685 | M | M.SflFF24DndEP (100% identity) | M.Eco566DndEP | |
| 20690 | DGQHR domain-containing protein | |||
| 20700 | accessory gene regulator B family protein | |||
| 20705 | R | EcosEC5DptHP (100% identity) | Eco566DptHP | |
| 20710 | DNA phosphorothioation-dependent restriction | |||
| 20705 | DNA phosphorothioation-dependent restriction | |||
| 20710 | R | SflFF24DptGP (100% identity) | Eco566DptGP | |
| 20715 | DNA phosphorothioation-dependent restriction | |||
| 20710 | DNA phosphorothioation-dependent restriction | |||
| 20715 | R | SflFF24DptFP (100% identity) | Eco566DptFP | |
| 20720 | integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13740 | isocitrate/isopropylmalate family dehydrogenase | |||
| 13745 | R | EmaE2C08McrCP (100% identity) | Eco566McrCP | |
| 13750 | R | EcoteDMcrBP (100% identity) | Eco566McrBP | |
| 13755 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15300 | replication endonuclease | |||
| 15305 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco566ORF15305P |
| 15310 | TraR/DksA family transcriptional regulator | |||