Escherichia coli 2017.13.01CC |
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Putative Escherichia coli 2017.13.01CC RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,752,396 bp | AP027813 |
| plasmid p2017.13.01CC_2: | 82,826 bp | AP027815 |
REBASE acronym: Eco301CC
Org_num: 72598
All begin VEE58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7720 | 104 aa hypothetical protein | |||
| 7730 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco301CCORF7740P |
| 7740 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco301CCORF7740P |
| 7750 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco301CCORF7740P |
| 7760 | 540 aa hypothetical protein | |||
| 38950 | insertion element IS1 4 protein InsA | |||
| 38960 | S | S.EcoVA2ORFAP (94% identity) | S.Eco301CCORF38960P | |
| 38970 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3280 | cell division protein DamX | |||
| 3290 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco301CCDamP |
| 3300 | ribulose-phosphate 3-epimerase | |||
| 4510 | acrEF/envCD operon repressor | |||
| 4520 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco301CCORF4520P |
| 4530 | DNA-binding protein Fis | |||
| 18190 | phosphohydrolase | |||
| 18200 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco301CCDcmP |
| 18210 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco301CCDcmP |
| 18220 | multidrug transporter | |||
| plasmid p2017.13.01CC_2 | ||||
| 46430 | 308 aa hypothetical protein | |||
| 46440 | M | M.SflN101ORF24625P (100% identity) | M.Eco301CCORF46440P | |
| 46450 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17890 | 183 aa hypothetical protein | |||
| 17900 | R | KpnFF72ORF8750P (99% identity) | CCGAG | Eco301CCORF17910P |
| 17910 | M | M.KpnYI2ORF1833P (100% identity) | CCGAG | M.Eco301CCORF17910P |
| 17920 | 462 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38970 | endoribonuclease SymE | |||
| 38980 | R | EcoVA2GmrSDP (100% identity) | Eco301CCGmrSDP | |
| 38990 | transposase | |||