Escherichia coli PSS-10 |
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Putative Escherichia coli PSS-10 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,669,522 bp | AP027685 |
| plasmid pPSS-10_1: | 159,684 bp | AP027686 |
| plasmid pPSS-10_3: | 90,539 bp | AP027688 |
| plasmid pPSS-10_4: | 51,832 bp | AP027689 |
REBASE acronym: EcoPSS10
Org_num: 72662
All begin VEE24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17750 | 388 aa hypothetical protein | |||
| 17760 | M | M.EcoVEF10ORF18030P (99% identity) | M.EcoPSS10ORF17760P | |
| 17770 | S | S.EcoM1881ORF10790P (65% identity) | S.EcoPSS10ORF17760P | |
| 17780 | 227 aa hypothetical protein | |||
| 17790 | 336 aa hypothetical protein | |||
| 17800 | R | EcoVEF10ORF18030P (99% identity) | EcoPSS10ORF17760P | |
| 17810 | metal-dependent hydrolase | |||
| 26950 | 290 aa hypothetical protein | |||
| 26960 | M | M.EcoPK8277ORF23015P (100% identity) | M.EcoPSS10ORF26960P | |
| 26970 | S | S1.Eco46C16ORF14780P (99% identity) | S.EcoPSS10ORF26960P | |
| 26980 | R | Eco46C16ORF14780P (99% identity) | EcoPSS10ORF26960P | |
| 26990 | insertion element IS1 protein InsB | |||
| 38050 | Mrr restriction system protein | |||
| 38060 | R | EcosS142ORF37770P (100% identity) | EcoPSS10ORF38070P | |
| 38070 | M | M.EfeC10ORF18400P (14% identity) | M.EcoPSS10ORF38070P | |
| 38080 | insertion element IS1 protein InsB | |||
| plasmid pPSS-10_1 | ||||
| 44500 | 168 aa hypothetical protein | |||
| 44510 | R | EcoPO3ORF25115P (99% identity) | AAAYNNNNNNNTTC | EcoPSS10ORF44530P |
| 44520 | S | S.Eco599ORF22575P (68% identity) | AAAYNNNNNNNTTC | S.EcoPSS10ORF44530P |
| 44530 | M | M.EcoR124II (99% identity) | AAAYNNNNNNNTTC | M.EcoPSS10ORF44530P |
| 44540 | DNA polymerase III subunit theta | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3220 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPSS10DamP |
| 3240 | ribulose-phosphate 3-epimerase | |||
| 4420 | acrEF/envCD operon repressor | |||
| 4430 | M | M.Sso8ORF2545P (99% identity) | ATGCAT | M.EcoPSS10ORF4430P |
| 4440 | DNA-binding protein Fis | |||
| 17110 | 231 aa hypothetical protein | |||
| 17120 | M | M.SflSTLE1DcmP (99% identity) | CCWGG | M.EcoPSS10DcmP |
| 17130 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoPSS10DcmP |
| 17140 | inner membrane transporter YedA | |||
| 38420 | 9-O-acetyl-N-acetylneuraminic acid | |||
| 38430 | R | EcosB2CORFAP (100% identity) | EcoPSS10ORF38430P | |
| 38440 | 134 aa hypothetical protein | |||
| plasmid pPSS-10_3 | ||||
| 47110 | 94 aa hypothetical protein | |||
| 47120 | M | M.Eco1497ORF20550P (86% identity) | M.EcoPSS10ORF47120P | |
| 47130 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pPSS-10_4 | ||||
| 48120 | IS30 family transposase | |||
| 48130 | R | SspS13ORF650P (100% identity) | EcoPSS10ORF48140P | |
| 48140 | M | M.SspS13ORF650P (100% identity) | M.EcoPSS10ORF48140P | |
| 48150 | 67 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38080 | insertion element IS1 protein InsB | |||
| 38090 | R | EcoLR27GmrSDP (82% identity) | EcoPSS10GmrSDP | |
| 38100 | transposase | |||