Escherichia coli PSJ-29 |
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Putative Escherichia coli PSJ-29 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,660,052 bp | AP027639 |
| plasmid pPSJ-29_1: | 272,804 bp | AP027640 |
REBASE acronym: EcoPSJ29
Org_num: 72654
All begin VEE36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17910 | 388 aa hypothetical protein | |||
| 17920 | M | M.EcoLR46ORF10490P (100% identity) | M.EcoPSJ29ORF17920P | |
| 17930 | S | S.EcoLR46ORF10490P (100% identity) | S.EcoPSJ29ORF17920P | |
| 17940 | 227 aa hypothetical protein | |||
| 17950 | R | EcoLR181ORF9430P (100% identity) | EcoPSJ29ORF17920P | |
| 17960 | metal-dependent hydrolase | |||
| 36920 | restriction endonuclease | |||
| 36930 | R | EcoPE15ORF18630P (100% identity) | CCANNNNNNNRTAYG | EcoPSJ29ORF36940P |
| 36940 | M | M.EcoPE15ORF18630P (100% identity) | CCANNNNNNNRTAYG | M.EcoPSJ29ORF36940P |
| 36950 | S | S.EcoLR181ORF29660P (100% identity) | CCANNNNNNNRTAYG | S.EcoPSJ29ORF36940P |
| 36960 | endoribonuclease SymE | |||
| 37420 | transposase InsE for insertion sequence IS3D | |||
| ??? | M | M.EcoPE15ORF18370P (100% identity) | M.EcoPSJ29ORF37430P | |
| 37440 | S | S.EcoPE15ORF18370P (100% identity) | S.EcoPSJ29ORF37430P | |
| 37450 | R | EcoPE15ORF18370P (100% identity) | EcoPSJ29ORF37430P | |
| 37460 | oxidoreductase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3470 | cell division protein DamX | |||
| 3480 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPSJ29DamP |
| 3490 | ribulose-phosphate 3-epimerase | |||
| 4640 | acrEF/envCD operon repressor | |||
| 4650 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoPSJ29ORF4650P |
| 4660 | DNA-binding protein Fis | |||
| 28130 | replication endonuclease from | |||
| 28140 | M | M.EcoZ01ORF1668P (100% identity) | GATC | M.EcoPSJ29ORF28140P |
| 28150 | 75 aa hypothetical protein | |||
| 37340 | 216 aa hypothetical protein | |||
| ??? | R | EcoPE15ORF18400P (100% identity) | EcoPSJ29ORF37350P | |
| 37370 | mcrBC 5-methylcytosine restriction system | |||
| plasmid pPSJ-29_1 | ||||
| 43800 | 88 aa hypothetical protein | |||
| 43810 | R | EcoPSJ14ORF47020P (100% identity) | GCWGC | EcoPSJ29ORF43810P |
| 43820 | transcriptional regulator | |||
| 44800 | 217 aa hypothetical protein | |||
| 44810 | M | M.Ype21801ORF197P (100% identity) | M.EcoPSJ29ORF44810P | |
| 44820 | DNA-binding protein | |||
| 45870 | nuclease | |||
| 45880 | M | M.StypAKU1ORFCP (100% identity) | CCWGG | M.EcoPSJ29ORF45880P |
| 45890 | 55 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 36910 | GTPase | |||
| 36920 | R | EcoPE15MrrP (100% identity) | EcoPSJ29MrrP | |
| 36930 | type I restriction-modification system | |||
| 36960 | endoribonuclease SymE | |||
| 36970 | R | EcoPE15McrBP (100% identity) | EcoPSJ29McrBP | |
| 36980 | R | EcoPE15McrCP (100% identity) | EcoPSJ29McrCP | |
| 37360 | 187 aa hypothetical protein | |||
| 37370 | R | EcoPE15McrC2P (100% identity) | EcoPSJ29McrC2P | |
| 37380 | R | EcoPE15McrB2P (100% identity) | EcoPSJ29McrB2P | |
| 37390 | restriction methylase | |||