Escherichia coli PSJ-14 |
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Putative Escherichia coli PSJ-14 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,726,028 bp | AP027626 |
| plasmid pPSJ-14_1: | 213,033 bp | AP027627 |
| plasmid pPSJ-14_2: | 126,072 bp | AP027628 |
REBASE acronym: EcoPSJ14
Org_num: 72650
All begin VEE38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7950 | 104 aa hypothetical protein | |||
| 7960 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoPSJ14ORF7970P |
| 7970 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoPSJ14ORF7970P |
| 7980 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoPSJ14ORF7970P |
| 7990 | 540 aa hypothetical protein | |||
| 18280 | 388 aa hypothetical protein | |||
| 18290 | M | M.EcoYPE12ORF11395P (100% identity) | M.EcoPSJ14ORF18290P | |
| 18300 | S | S.EcoYPE12ORF11395P (100% identity) | S.EcoPSJ14ORF18290P | |
| 18310 | 227 aa hypothetical protein | |||
| 18320 | 336 aa hypothetical protein | |||
| 18330 | R | EcoE1441ORF1991P (99% identity) | EcoPSJ14ORF18290P | |
| 18340 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3260 | cell division protein DamX | |||
| 3270 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPSJ14DamP |
| 3280 | ribulose-phosphate 3-epimerase | |||
| 4450 | acrEF/envCD operon repressor | |||
| 4460 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoPSJ14ORF4460P |
| 4470 | DNA-binding protein Fis | |||
| 17620 | 142 aa hypothetical protein | |||
| 17630 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoPSJ14DcmP |
| 17640 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoPSJ14DcmP |
| 17650 | inner membrane transporter YedA | |||
| 29260 | protein ninX | |||
| ??? | M | M.EcoSCU488ORF190P (92% identity) | GATC | M.EcoPSJ14ORF29270P |
| 29280 | protein ninB | |||
| plasmid pPSJ-14_1 | ||||
| 44650 | 55 aa hypothetical protein | |||
| 44660 | M | M.StyCORF187P (100% identity) | CCWGG | M.EcoPSJ14ORF44660P |
| 44670 | nuclease | |||
| 46150 | DNA-binding protein | |||
| 46160 | M | M.Ype21801ORF197P (100% identity) | M.EcoPSJ14ORF46160P | |
| 46170 | 273 aa hypothetical protein | |||
| plasmid pPSJ-14_2 | ||||
| 47010 | transcriptional regulator | |||
| 47020 | R | EcoPSJ29ORF43810P (100% identity) | GCWGC | EcoPSJ14ORF47020P |
| 47030 | 125 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16000 | 435 aa hypothetical protein | |||
| 16010 | R | EcoLR06ORF15990P (100% identity) | EcoPSJ14ORF16010P | |
| 16020 | 115 aa hypothetical protein | |||