Escherichia coli PSJ-12 |
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Putative Escherichia coli PSJ-12 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,714,276 bp | AP027622 |
| plasmid pPSJ-12_1: | 84,338 bp | AP027623 |
REBASE acronym: EcoPSJ12
Org_num: 72649
All begin VEE42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22620 | 550 aa hypothetical protein | |||
| 22630 | R | EcoH7ORF11345P (100% identity) | EcoPSJ12ORF22640P | |
| 22640 | M | M.EcoLR41ORF36090P (99% identity) | M.EcoPSJ12ORF22640P | |
| 22650 | S | S.Efe35473ORFDP (21% identity) | S1.EcoPSJ12ORF22640P | |
| 22660 | S | S.EcoYPE10ORF21230P (71% identity) | S2.EcoPSJ12ORF22640P | |
| 22670 | endoribonuclease SymE | |||
| 23050 | restriction methylase | |||
| 23060 | M | M.SsoSE61ORF6540P (30% identity) | M.EcoPSJ12ORF23060AP | |
| 23070 | transposase InsF for insertion sequence IS3E | |||
| 23080 | transposase InsE for insertion sequence IS3D | |||
| 23090 | M | M.EcoYPE3ORF20380P (63% identity) | M.EcoPSJ12ORF23060BP | |
| 23100 | S | S.EcoYPE3ORF20380P (25% identity) | S1.EcoPSJ12ORF23060P | |
| 23110 | transposase InsH for insertion sequence element | |||
| 23120 | S | S.EcoMB20ORF19675P (97% identity) | S2.EcoPSJ12ORF23060P | |
| 23130 | R | EcoYPE3ORF20380P (100% identity) | EcoPSJ12ORF23060P | |
| 23140 | transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1870 | 231 aa hypothetical protein | |||
| 1880 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoPSJ12DcmP |
| 1890 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoPSJ12DcmP |
| 1900 | multidrug transporter | |||
| 5760 | 140 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoPSJ12ORF5770P | |
| 5780 | 41 aa hypothetical protein | |||
| 13460 | replication endonuclease from | |||
| 13470 | M | M.EcoSTEC1014ORF16145P (99% identity) | GATC | M.EcoPSJ12ORF13470P |
| 13480 | 75 aa hypothetical protein | |||
| 23000 | 216 aa hypothetical protein | |||
| ??? | R | SflFF17ORF19275P (100% identity) | EcoPSJ12ORF23010P | |
| 23030 | mcrBC 5-methylcytosine restriction system | |||
| 31690 | cell division protein DamX | |||
| 31700 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPSJ12DamP |
| 31710 | ribulose-phosphate 3-epimerase | |||
| 32870 | acrEF/envCD operon repressor | |||
| 32880 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoPSJ12ORF32880P |
| 32890 | DNA-binding protein Fis | |||
| plasmid pPSJ-12_1 | ||||
| 44400 | ATP-dependent helicase | |||
| 44410 | RM | EcoGF43ORF11010P (96% identity) | EcoPSJ12ORF44410P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22670 | endoribonuclease SymE | |||
| 22680 | R | EcoSTEC508GmrSDP (99% identity) | EcoPSJ12GmrSDP | |
| 22690 | 49 aa hypothetical protein | |||
| 23020 | 187 aa hypothetical protein | |||
| 23030 | R | EcoYPE3McrCP (100% identity) | EcoPSJ12McrCP | |
| 23040 | R | EcoYPE3McrBP (100% identity) | EcoPSJ12McrBP | |
| 23050 | restriction methylase | |||