Escherichia coli PSJ-07 |
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Putative Escherichia coli PSJ-07 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,772,760 bp | AP027619 |
| plasmid pPSJ-07_2: | 51,444 bp | AP027621 |
REBASE acronym: EcoPSJ07
Org_num: 72648
All begin VEE45_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39260 | 388 aa hypothetical protein | |||
| 39270 | M | M.Ecou021ORF19870P (100% identity) | M.EcoPSJ07ORF39270P | |
| 39280 | S | S.EcoLR13ORF25400P (65% identity) | S.EcoPSJ07ORF39270P | |
| 39290 | R | Eco5074ORF11500P (100% identity) | EcoPSJ07ORF39270P | |
| 39300 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3190 | cell division protein DamX | |||
| 3200 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPSJ07DamP |
| 3210 | ribulose-phosphate 3-epimerase | |||
| 4400 | acrEF/envCD operon repressor | |||
| 4410 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoPSJ07ORF4410P |
| 4420 | DNA-binding protein Fis | |||
| 8390 | transcriptional regulator | |||
| 8400 | R | SflFF67ORF22305P (100% identity) | GCWGC | EcoPSJ07ORF8400P |
| 8410 | transposase | |||
| 18020 | 142 aa hypothetical protein | |||
| 18030 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoPSJ07DcmP |
| 18040 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoPSJ07DcmP |
| 18050 | inner membrane transporter YedA | |||
| 30410 | replication endonuclease from | |||
| 30420 | M | M.Sen6020ORF258P (100% identity) | GATC | M.EcoPSJ07ORF30420P |
| 30430 | 75 aa hypothetical protein | |||
| 33420 | exonuclease | |||
| 33430 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoPSJ07ORF33430P |
| 33440 | 71 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pPSJ-07_2 | ||||
| 46080 | 67 aa hypothetical protein | |||
| 46090 | M | M.SspS13ORF650P (100% identity) | M.EcoPSJ07ORF46090P | |
| 46100 | R | SspS13ORF650P (100% identity) | EcoPSJ07ORF46090P | |
| 46110 | IS30 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39250 | membrane protein | |||
| 39260 | R | EcosEC9MrrP (100% identity) | EcoPSJ07MrrP | |
| 39270 | DNA methyltransferase | |||