Escherichia coli LR-62-2 |
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Putative Escherichia coli LR-62-2 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,921,701 bp | AP027576 |
| plasmid pLR-62-2_1: | 213,958 bp | AP027577 |
| plasmid pLR-62-2_3: | 89,357 bp | AP027579 |
REBASE acronym: EcoLR622
Org_num: 72640
All begin VEE29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18290 | 183 aa hypothetical protein | |||
| 18300 | M | M.Ecos142ORF9685P (99% identity) | GATGNNNNNNTAC | M.EcoLR622ORF18300P |
| 18310 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoLR622ORF18300P |
| 18320 | 227 aa hypothetical protein | |||
| 18330 | 336 aa hypothetical protein | |||
| 18340 | R | Ecoppa2ORF22455P (99% identity) | GATGNNNNNNTAC | EcoLR622ORF18300P |
| 18350 | metal-dependent hydrolase | |||
| plasmid pLR-62-2_1 | ||||
| 46160 | 168 aa hypothetical protein | |||
| 46170 | R | EcoPSS13ORF44690P (100% identity) | EcoLR622ORF46190P | |
| 46180 | S | S.EcoE8ORF23565P (100% identity) | S.EcoLR622ORF46190P | |
| 46190 | M | M.EcoE8ORF23565P (100% identity) | M.EcoLR622ORF46190P | |
| 46200 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3540 | cell division protein DamX | |||
| 3550 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR622DamP |
| 3560 | ribulose-phosphate 3-epimerase | |||
| 4520 | acrEF/envCD operon transcriptional regulator | |||
| 4530 | M | M.Ecoppa2ORF6235P (99% identity) | ATGCAT | M.EcoLR622ORF4530P |
| 4540 | DNA-binding protein Fis | |||
| 11830 | 98 aa hypothetical protein | |||
| 11840 | M | M.Ecor024ORF22975P (100% identity) | M.EcoLR622ORF11840P | |
| 11850 | ribosome-associated inhibitor A | |||
| 35410 | exonuclease | |||
| 35420 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoLR622ORF35420P |
| 35430 | 71 aa hypothetical protein | |||
| 38980 | RM | EcoZ30ORF19095P (100% identity) | EcoLR622ORF38980P | |
| 38990 | ATP-dependent helicase | |||
| 39060 | 216 aa hypothetical protein | |||
| 39070 | R | Ecoppa2ORF12035P (99% identity) | EcoLR622ORF39070P | |
| 39080 | 332 aa hypothetical protein | |||
| plasmid pLR-62-2_3 | ||||
| 49110 | plasmid stability protein StbA | |||
| 49120 | M | M.Xca80ORFEP (100% identity) | M.EcoLR622ORF49120P | |
| 49130 | 73 aa hypothetical protein | |||