Escherichia coli LR-60 |
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Putative Escherichia coli LR-60 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,961,976 bp | AP027570 |
| plasmid pLR-60_1: | 171,070 bp | AP027571 |
| plasmid pLR-60_2: | 112,429 bp | AP027572 |
REBASE acronym: EcoLR60
Org_num: 72639
All begin VEE03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18910 | 183 aa hypothetical protein | |||
| 18920 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoLR60ORF18920P |
| 18930 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoLR60ORF18920P |
| 18940 | 227 aa hypothetical protein | |||
| 18950 | 67 aa hypothetical protein | |||
| 18960 | 336 aa hypothetical protein | |||
| 18970 | R | Ecoppa2ORF22455P (100% identity) | GATGNNNNNNTAC | EcoLR60ORF18920P |
| 18980 | metal-dependent hydrolase | |||
| plasmid pLR-60_2 | ||||
| 48100 | 52 aa hypothetical protein | |||
| 48110 | M | M.Ecosa7ORFFP (99% identity) | M.EcoLR60ORF48110P | |
| 48120 | S | S.Eco021ORF23820P (100% identity) | S.EcoLR60ORF48110P | |
| 48130 | R | Eco021ORF23820P (100% identity) | EcoLR60ORF48110P | |
| 48140 | 158 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3590 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR60DamP |
| 3610 | ribulose-phosphate 3-epimerase | |||
| 4590 | acrEF/envCD operon transcriptional regulator | |||
| 4600 | M | M.Ecoppa2ORF6235P (100% identity) | ATGCAT | M.EcoLR60ORF4600P |
| 4610 | DNA-binding protein Fis | |||
| 38590 | Lysis protein S homolog from lambdoid prophage | |||
| 38600 | M | M.Sso63633ORF22290P (100% identity) | M.EcoLR60ORF38600P | |
| 38610 | 67 aa hypothetical protein | |||
| 38670 | LexA family transcriptional regulator | |||
| 38680 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoLR60ORF38680P |
| 38690 | 100 aa hypothetical protein | |||
| 39460 | RM | EcoZ30ORF19095P (100% identity) | EcoLR60ORF39460P | |
| 39470 | ATP-dependent helicase | |||
| 39540 | 216 aa hypothetical protein | |||
| 39550 | R | Ecoppa2ORF12035P (100% identity) | EcoLR60ORF39550P | |
| 39560 | 332 aa hypothetical protein | |||
| plasmid pLR-60_1 | ||||
| 46730 | 73 aa hypothetical protein | |||
| 46740 | M | M.SflN92ORF24820P (100% identity) | M.EcoLR60ORF46740P | |
| 46750 | 145 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLR-60_2 | ||||
| 48230 | 76 aa hypothetical protein | |||
| 48240 | M | M.EcoMB53ORF22735P (100% identity) | M.EcoLR60ORF48240P | |
| 48250 | 269 aa hypothetical protein | |||