Escherichia coli LR-48 |
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Putative Escherichia coli LR-48 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,604,385 bp | AP027543 |
| plasmid pLR-48_1: | 112,533 bp | AP027544 |
| plasmid pLR-48_2: | 111,667 bp | AP027545 |
| plasmid pLR-48_3: | 81,917 bp | AP027546 |
REBASE acronym: EcoLR48
Org_num: 72635
All begin VEE34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLR-48_1 | ||||
| 43920 | 73 aa hypothetical protein | |||
| 43930 | M | M.EcoIMP163ORFBP (99% identity) | M.EcoLR48ORF43930P | |
| 43940 | S | S.EcoF138ORF28320P (98% identity) | S.EcoLR48ORF43930P | |
| 43950 | R | EcoPK8277ORF23015P (100% identity) | EcoLR48ORF43930P | |
| 43960 | 168 aa hypothetical protein | |||
| plasmid pLR-48_2 | ||||
| 45060 | 52 aa hypothetical protein | |||
| 45070 | M | M.EcoLR13ORF48980P (99% identity) | M.EcoLR48ORF45070P | |
| 45080 | S | S.EcoLR641ORF45460P (100% identity) | S.EcoLR48ORF45070P | |
| 45090 | R | Ecoi162ORF4671P (99% identity) | EcoLR48ORF45070P | |
| 45100 | 86 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3220 | cell division protein DamX | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLR48DamP |
| 3240 | ribulose-phosphate 3-epimerase | |||
| 4380 | acrEF/envCD operon repressor | |||
| 4390 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoLR48ORF4390P |
| 4400 | DNA-binding protein Fis | |||
| 16480 | 142 aa hypothetical protein | |||
| 16490 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoLR48DcmP |
| 16500 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoLR48DcmP |
| 16510 | inner membrane transporter YedA | |||
| 28020 | replication endonuclease from | |||
| 28030 | M | M.EcoZ01ORF1668P (100% identity) | GATC | M.EcoLR48ORF28030P |
| 28040 | 75 aa hypothetical protein | |||
| plasmid pLR-48_3 | ||||
| 45670 | 88 aa hypothetical protein | |||
| 45680 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.EcoLR48ORF45680P |
| 45690 | R | Ubap201ORF4P (100% identity) | CCWGG | EcoLR48ORF45680P |
| 45700 | IS6 family transposase | |||
| 45740 | 308 aa hypothetical protein | |||
| 45750 | M | M.Sen1357ORF24335P (100% identity) | M.EcoLR48ORF45750P | |
| 45760 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24580 | 50 aa hypothetical protein | |||
| 24590 | R | EmaE2C08McrCP (98% identity) | EcoLR48McrCP | |
| 24600 | R | EcoUKMcrBP (100% identity) | EcoLR48McrBP | |
| 24610 | insertion element IS1 4 protein InsA | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLR-48_2 | ||||
| 45210 | 76 aa hypothetical protein | |||
| 45220 | M | M.EcoHM107ORF24040P (100% identity) | GATC | M.EcoLR48ORF45220P |
| 45230 | 269 aa hypothetical protein | |||