Escherichia coli LR-31 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli LR-31 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
Complete sequence: 5,123,593 bp
GenBank #: AP027520
REBASE acronym: EcoLR31
Org_num: 72630
All begin VEE27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15490 | IS5 family transposase | |||
| ??? | S | S2.EcoS082ORF15350P (98% identity) | S2.EcoLR31ORF15520P | |
| 15500 | R | EcoW1316ORF930P (99% identity) | EcoLR31ORF15520P | |
| 15510 | S | S.Sfl877II (99% identity) | AAAYNNNNNNCTC | S1.EcoLR31ORF15520P |
| 15520 | M | M.Sso8ORF17680P (99% identity) | M.EcoLR31ORF15520P | |
| 15530 | 290 aa hypothetical protein | |||
| 17510 | 117 aa hypothetical protein | |||
| 17520 | M | M.EcoDLI6nORF5865P (100% identity) | AGTNNNNNNCTC | M.EcoLR31ORF17520P |
| 17530 | S | S.EcoDLI6nORF5865P (100% identity) | AGTNNNNNNCTC | S.EcoLR31ORF17520P |
| 17540 | 387 aa hypothetical protein | |||
| 17550 | R | EcoD22ORF27710P (100% identity) | AGTNNNNNNCTC | EcoLR31ORF17520P |
| 17560 | 90 aa hypothetical protein | |||
| 38260 | 540 aa hypothetical protein | |||
| 38270 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoLR31ORF38280P |
| 38280 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoLR31ORF38280P |
| 38290 | R | SspZ54ORF5015P (99% identity) | TGANNNNNNCTTC | EcoLR31ORF38280P |
| 38300 | 104 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8970 | alkaline phosphatase | |||
| ??? | RM | EcoPE15ORF17615P (99% identity) | EcoLR31ORF8980P | |
| 9010 | 1213 aa hypothetical protein | |||
| 28070 | inner membrane transporter YedA | |||
| 28080 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoLR31DcmP |
| 28090 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoLR31DcmP |
| 28100 | 142 aa hypothetical protein | |||
| 30570 | 115 aa hypothetical protein | |||
| 30580 | M | M.EcoPEC0006ORF1235P (99% identity) | M.EcoLR31ORF30580P | |
| 30590 | 71 aa hypothetical protein | |||
| 38840 | 549 aa hypothetical protein | |||
| 38850 | R | SflFF24DptGP (100% identity) | EcoLR31DptGP | |
| 38860 | 1684 aa hypothetical protein | |||
| 38850 | 441 aa hypothetical protein | |||
| 38860 | R | EcosEC5DptHP (100% identity) | EcoLR31DptHP | |
| 38870 | 113 aa hypothetical protein | |||
| 38900 | 197 aa hypothetical protein | |||
| 38910 | M | M.SflFF24DndEP (100% identity) | M.EcoLR31DndEP | |
| 38920 | 666 aa hypothetical protein | |||
| 38910 | 118 aa hypothetical protein | |||
| 38920 | M | M.SflFF24DndDP (100% identity) | M.EcoLR31DndDP | |
| 38930 | 544 aa hypothetical protein | |||
| 38920 | 666 aa hypothetical protein | |||
| 38930 | M | M.SflFF24DndCP (100% identity) | M.EcoLR31DndCP | |
| 38940 | 361 aa hypothetical protein | |||
| 38930 | 544 aa hypothetical protein | |||
| 38940 | M | M.SflFF24DndBP (100% identity) | M.EcoLR31DndBP | |
| 38950 | 57 aa hypothetical protein | |||
| 42340 | DNA-binding protein Fis | |||
| 42350 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLR31ORF42350P |
| 42360 | acrEF/envCD operon repressor | |||
| 43510 | ribulose-phosphate 3-epimerase | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLR31DamP |
| 43530 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5540 | 49 aa hypothetical protein | |||
| 5550 | R | Ecou015GmrSDP (93% identity) | EcoLR31GmrSDP | |
| 5560 | repressor TnpA | |||