Escherichia coli LR-13 |
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Putative Escherichia coli LR-13 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,689,922 bp | AP027477 |
| plasmid pLR-13_1: | 140,473 bp | AP027478 |
REBASE acronym: EcoLR13
Org_num: 72621
All begin VEE15_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 40620 | 98 aa hypothetical protein | |||
| 40630 | R | EcoMB57ORF19930P (100% identity) | EcoLR13ORF40640P | |
| 40640 | M | M.SspZ54ORF5015P (72% identity) | M.EcoLR13ORF40640P | |
| 40650 | 88 aa hypothetical protein | |||
| 40660 | S | S.EcosC41ORF22705P (91% identity) | S.EcoLR13ORF40640P | |
| 40670 | 540 aa hypothetical protein | |||
| plasmid pLR-13_1 | ||||
| 48950 | 167 aa hypothetical protein | |||
| 48960 | R | SspS13ORF175P (99% identity) | CYYANNNNNNRTGA | EcoLR13ORF48980P |
| 48970 | S | S.EcoO127ORF4610P (99% identity) | CYYANNNNNNRTGA | S.EcoLR13ORF48980P |
| 48980 | M | M.Eco6474ORF24285P (99% identity) | CYYANNNNNNRTGA | M.EcoLR13ORF48980P |
| 48990 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2620 | phosphohydrolase | |||
| ??? | M | M.EcoC9098DcmP (99% identity) | CCWGG | M.EcoLR13DcmP |
| 2650 | V | V.EcoR42DcmP (100% identity) | V.EcoLR13DcmP | |
| 2660 | inner membrane transporter YedA | |||
| 14540 | replication endonuclease from | |||
| 14550 | M | M.SspS13ORF8710P (99% identity) | GATC | M.EcoLR13ORF14550P |
| 14560 | 75 aa hypothetical protein | |||
| 21530 | LexA family transcriptional regulator | |||
| 21540 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoLR13ORF21540P |
| 21550 | 83 aa hypothetical protein | |||
| 25800 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 25810 | R | EcoC487ORFBP (96% identity) | EcoLR13ORF25810P | |
| 25820 | 332 aa hypothetical protein | |||
| 35820 | cell division protein DamX | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLR13DamP |
| 35840 | ribulose-phosphate 3-epimerase | |||
| 36920 | acrEF/envCD operon repressor | |||
| 36930 | M | M.Eco212RORF20025P (98% identity) | ATGCAT | M.EcoLR13ORF36930P |
| 36940 | DNA-binding protein Fis | |||
| plasmid pLR-13_1 | ||||
| 50300 | recombination-associated protein RdgC | |||
| 50310 | M | M.Eco06ORF9275P (75% identity) | M.EcoLR13ORF50310P | |
| 50320 | 63 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25380 | membrane protein | |||
| 25390 | R | EfeE4C07MrrP (100% identity) | EcoLR13MrrP | |
| 25400 | DNA methyltransferase | |||