Escherichia coli 2023JQ-00025 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli 2023JQ-00025 RM systems
Ref: Hergert,J. et al. unpublished
REBASE ref # 35260
| Sequence length: | GenBank #: | |
| Chromosome: | 5,019,660 bp | CP136913 |
| plasmid unnamed1: | 185,591 bp | CP136914 |
| plasmid unnamed2: | 142,943 bp | CP136915 |
REBASE acronym: Eco025
Org_num: 72614
All begin R2S07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20165 | adenine/cytosine-specific restriction | |||
| 20170 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | Eco025ORF20175P |
| 20175 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.Eco025ORF20175P |
| 20180 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco025ORF20175P |
| 20185 | endoribonuclease SymE | |||
| plasmid unnamed2 | ||||
| 26060 | IS1-like element IS1B family transposase | |||
| 26065 | M | M.SflFF34ORF9300P (60% identity) | M.Eco025ORF26065P | |
| 26070 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1915 | cell division protein DamX | |||
| 1920 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco025DamP |
| 1925 | ribulose-phosphate 3-epimerase | |||
| 2445 | DUF2556 family protein | |||
| 2450 | M | M.Ecos69ORF20890P (99% identity) | ATGCAT | M.Eco025ORF2450P |
| 2455 | DNA-binding transcriptional regulator Fis | |||
| 9370 | phosphohydrolase | |||
| 9375 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco025DcmP |
| 9380 | V | V.Ecostr9DcmP (74% identity) | CCWGG | V.Eco025DcmP |
| 9385 | drug/metabolite exporter YedA | |||
| plasmid unnamed1 | ||||
| 24840 | 100 aa hypothetical protein | |||
| 24845 | M | M.YrupYR1ORFCP (100% identity) | CCNGG | M.Eco025ORF24845P |
| 24850 | 143 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 25535 | IS1 family transposase | |||
| 25540 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco025ORF25540P |
| 25545 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco025ORF25540P |
| 25550 | EAL domain-containing protein | |||
| 26000 | 73 aa hypothetical protein | |||
| 26005 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco025ORF26005P |
| 26010 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20160 | GTPase | |||
| 20165 | R | Ssp28760MrrP (100% identity) | Eco025MrrP | |
| 20170 | type I restriction-modification system | |||