Escherichia coli isolate F138 |
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Putative Escherichia coli isolate F138 RM systems
Ref: Leclercq,S. unpublished
REBASE ref # 37790
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,787,915 bp | OY754382 |
| plasmid pF138-1: | 197,660 bp | OY754383 |
| plasmid pF138-2: | 128,731 bp | OY754384 |
| plasmid pF138-3: | 96,900 bp | OY754385 |
REBASE acronym: EcoF138
Org_num: 72676
All begin FGAF138_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 26580 | GTPase family protein | |||
| 26590 | M | M.Sen1467ORF14775P (100% identity) | CACNNNNNNTCC | M.EcoF138ORF26590P |
| 26600 | S | S.Sen1467ORF14775P (100% identity) | CACNNNNNNTCC | S.EcoF138ORF26590P |
| 26610 | R | Eco869RtORF22560P (99% identity) | CACNNNNNNTCC | EcoF138ORF26590P |
| 26620 | IS5 family transposase ISKpn26 | |||
| 28310 | GTPase family protein | |||
| 28320 | M | M.EcoS082ORF15350P (100% identity) | M.EcoF138ORF28320P | |
| 28330 | S | S.EcoLR48ORF43930P (98% identity) | S.EcoF138ORF28320P | |
| 28340 | R | EcoPSJ14ORF27630P (99% identity) | EcoF138ORF28320P | |
| 28350 | IS5 family transposase ISKpn26 | |||
| 38000 | adenine/cytosine-specific restriction | |||
| 38010 | R | EcoPSJ29ORF36940P (100% identity) | CCANNNNNNNRTAYG | EcoF138ORF38020P |
| 38020 | M | M.EcoPSJ29ORF36940P (100% identity) | CCANNNNNNNRTAYG | M.EcoF138ORF38020P |
| 38030 | S | S.EcoPE15ORF18630P (100% identity) | CCANNNNNNNRTAYG | S.EcoF138ORF38020P |
| 38040 | endoribonuclease SymE | |||
| 38540 | IS3 family transposase | |||
| ??? | M | M.EcoPSJ29ORF37430P (100% identity) | M.EcoF138ORF38550P | |
| 38560 | S | S.EcoPSJ29ORF37430P (100% identity) | S.EcoF138ORF38550P | |
| 38570 | R | EcoPSJ29ORF37430P (100% identity) | EcoF138ORF38550P | |
| 38580 | NADPH-dependent aldehyde reductase Ahr | |||
| plasmid pF138-2 | ||||
| 980 | 73 aa hypothetical protein | |||
| 990 | M | M.EcosS142ORF43560P (100% identity) | M.EcoF138ORF990P | |
| 1000 | S | S1.Efe44C21ORF22625P (100% identity) | S.EcoF138ORF990P | |
| 1010 | R | EcoPK8277ORF23015P (99% identity) | EcoF138ORF990P | |
| 1020 | NIF family HAD-type phosphatase | |||
| plasmid pF138-3 | ||||
| 47800 | 73 aa hypothetical protein | |||
| 47810 | M | M.Eco46C05ORF23625P (100% identity) | M.EcoF138ORF47810P | |
| 47820 | S | S.Eco1919D3ORF1435P (67% identity) | S1.EcoF138ORF47810P | |
| 47830 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3440 | cell division protein DamX | |||
| 3450 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoF138DamP |
| 3460 | ribulose-phosphate 3-epimerase | |||
| 4660 | DUF2556 family protein | |||
| 4670 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoF138ORF4670P |
| 4680 | site-specific integrase | |||
| 12160 | DUF1382 family protein | |||
| 12170 | M | M.EcoF719ORF12920P (99% identity) | M.EcoF138ORF12170P | |
| 12180 | PerC family transcriptional regulator | |||
| 17830 | phosphohydrolase | |||
| 17840 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoF138DcmP |
| 17850 | V | V.SsoST152DcmP (100% identity) | CCWGG | V.EcoF138DcmP |
| 17860 | drug/metabolite exporter YedA | |||
| 37450 | phage lysis protein EssD | |||
| 37460 | M | M.Sso63633ORF22290P (100% identity) | M.EcoF138ORF37460P | |
| 37470 | 67 aa hypothetical protein | |||
| 37520 | LexA family transcriptional regulator | |||
| 37530 | M | M.Sso30ORF925P (100% identity) | GATC | M.EcoF138ORF37530P |
| 37540 | PerC family transcriptional regulator | |||
| 38450 | 216 aa hypothetical protein | |||
| 38460 | R | EcoPSJ29ORF37350P (100% identity) | EcoF138ORF38460P | |
| 38470 | McrC family protein | |||
| plasmid pF138-1 | ||||
| 45280 | 55 aa hypothetical protein | |||
| 45290 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoF138ORF45290P |
| 45300 | thermonuclease family protein | |||
| 46050 | 48 aa hypothetical protein | |||
| 46060 | M | M.YpsF1ORFBP (100% identity) | M.EcoF138ORF46060P | |
| 46070 | 202 aa hypothetical protein | |||
| 46300 | DNA-binding protein | |||
| 46310 | M | M.YpsF1ORFDP (95% identity) | M.EcoF138ORF46310P | |
| 46320 | 284 aa hypothetical protein | |||
| plasmid pF138-2 | ||||
| 220 | 46 aa hypothetical protein | |||
| 230 | R | SflFF67ORF22305P (100% identity) | GCWGC | EcoF138ORF230P |
| 240 | 113 aa hypothetical protein | |||
| plasmid pF138-3 | ||||
| 48180 | conserved protein of unknown function | |||
| 48190 | M | M.SenBR027ORFEP (100% identity) | SAY | M.EcoF138ORF48190P |
| 48200 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 37990 | GTPase | |||
| 38000 | R | EcoPSJ29MrrP (100% identity) | EcoF138MrrP | |
| 38010 | type I restriction-modification system | |||
| 38040 | endoribonuclease SymE | |||
| 38050 | R | EcoPSJ29McrBP (100% identity) | EcoF138McrBP | |
| 38060 | R | EcoPSJ29McrCP (100% identity) | EcoF138McrCP | |
| 38460 | HNH endonuclease | |||
| 38470 | R | EcoPSJ29McrC2P (100% identity) | EcoF138McrC2P | |
| 38480 | R | EcoPSJ29McrB2P (100% identity) | EcoF138McrB2P | |
| 38490 | IS3 family transposase | |||