Escherichia coli isolate F95 |
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Putative Escherichia coli isolate F95 RM systems
Ref: Leclercq,S. unpublished
REBASE ref # 37790
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,986,004 bp | OY754453 |
| plasmid pF95-1: | 114,115 bp | OY754455 |
| plasmid pF95-2: | 109,347 bp | OY754456 |
| plasmid pF95-3: | 65,744 bp | OY754457 |
REBASE acronym: EcoF95
Org_num: 72688
All begin FGAF95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 5080 | endoribonuclease SymE | |||
| 5090 | S | S.EcoI110ORF19925P (100% identity) | S.EcoF95ORF5100P | |
| 5100 | M | M.EcoI110ORF19925P (100% identity) | M.EcoF95ORF5100P | |
| 5110 | DEAD/DEAH box helicase family protein | |||
| 25510 | SprT family zinc-dependent metalloprotease | |||
| 25520 | R | EcoI110ORF13875P (99% identity) | EcoF95ORF25560P | |
| 25530 | UPF0149 family protein YecA | |||
| 25540 | IS5 family transposase IS5 | |||
| 25550 | S | S.EcoI110ORF13875P (85% identity) | S.EcoF95ORF25560P | |
| 25560 | M | M.EcoI110ORF13875P (100% identity) | M.EcoF95ORF25560P | |
| 25570 | IS5 family transposase IS5 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 20 | DUF3850 domain-containing protein | |||
| 30 | M | M.EcoO783ORF23770P (100% identity) | M.EcoF95ORF30P | |
| 40 | 59 aa hypothetical protein | |||
| 50 | IS3 family transposase IS2 | |||
| 60 | IS3 family transposase | |||
| 70 | R | EcoO783ORF23770P (84% identity) | EcoF95ORF30P | |
| 80 | phage portal protein | |||
| 12910 | recombination protein NinB | |||
| 12920 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoF95ORF12920P |
| 12930 | DUF2591 family protein | |||
| 26130 | drug/metabolite exporter YedA | |||
| 26140 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoF95DcmP |
| 26150 | M | M.SflSTLE3DcmP (99% identity) | CCWGG | M.EcoF95DcmP |
| 26160 | phosphohydrolase | |||
| 33360 | replication endonuclease | |||
| 33370 | M | M.EcoVCSW8ORF5460P (100% identity) | GATC | M.EcoF95ORF33370P |
| 33380 | TraR/DksA family transcriptional regulator | |||
| 40000 | DNA-binding transcriptional regulator Fis | |||
| 40010 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoF95ORF40010P |
| 40020 | DUF2556 family protein | |||
| 41200 | ribulose-phosphate 3-epimerase | |||
| 41210 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoF95DamP |
| 41220 | cell division protein DamX | |||
| plasmid pF95-1 | ||||
| 46960 | conserved protein of unknown function | |||
| 46970 | M | M.Sen72779ORF22555P (100% identity) | M.EcoF95ORF46970P | |
| 46980 | conserved protein of unknown function | |||
| plasmid pF95-2 | ||||
| 48670 | conserved protein of unknown function | |||
| 48680 | M | M.Ecos69ORF26765P (100% identity) | M.EcoF95ORF48680P | |
| 48690 | conserved protein of unknown function | |||
| plasmid pF95-3 | ||||
| 49070 | conserved protein of unknown function | |||
| 49080 | M | M.Ecos69ORF26765P (100% identity) | M.EcoF95ORF49080P | |
| 49090 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 5060 | DUF1127 domain-containing protein | |||
| 5070 | R | EcoSTEC508GmrSDP (100% identity) | EcoF95GmrSDP | |
| 5080 | endoribonuclease SymE | |||