Escherichia coli DCM188-6 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli DCM188-6 RM systems
Ref: Wan,K.H. et al. unpublished
REBASE ref # 37649
Complete sequence: 4,631,079 bp
GenBank #: CP136396
REBASE acronym: EcoCM1886
Org_num: 72181
All begin RX578_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19320 | adenine/cytosine-specific restriction | |||
| 19325 | R | EcoW25113ORF11385P (100% identity) | AACNNNNNNGTGC | EcoCM1886ORF19330P |
| 19330 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoCM1886ORF19330P |
| 19335 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoCM1886ORF19330P |
| 19340 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1665 | cell division protein DamX | |||
| 1670 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCM1886DamP |
| 1675 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoCM1886ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 8860 | phosphohydrolase | |||
| 8865 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoCM1886DcmP |
| 8870 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoCM1886DcmP |
| 8875 | drug/metabolite exporter YedA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13080 | isocitrate/isopropylmalate family dehydrogenase | |||
| 13085 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoCM1886ORF13085P |
| 13090 | site-specific DNA recombinase | |||
| 19315 | GTPase | |||
| 19320 | R | SenHNK130MrrP (100% identity) | EcoCM1886MrrP | |
| 19325 | type I restriction-modification system | |||