Shigella dysenteriae NCDC 599-52 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Shigella dysenteriae NCDC 599-52 RM systems
Ref: Parsot,C. unpublished
REBASE ref # 37648
Complete sequence: 4,641,624 bp
GenBank #: CP119450
REBASE acronym: Sdy59952
Org_num: 72354
All begin PWE30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2685 | WYL domain-containing protein | |||
| 2690 | R | Sdy10956IP (100% identity) | GGANNNNNNCTTT | Sdy59952ORF2695P |
| 2695 | M | M.Sdy10956I (100% identity) | GGANNNNNNCTTT | M.Sdy59952ORF2695P |
| 2700 | S | S.Sso30807I (100% identity) | GGANNNNNNCTTT | S.Sdy59952ORF2695P |
| 2705 | SIR2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 790 | cell division protein DamX | |||
| 795 | M | M.Sdy10956DamP (100% identity) | GATC | M.Sdy59952DamP |
| 800 | ribulose-phosphate 3-epimerase | |||
| 1355 | DUF2556 family protein | |||
| 1360 | M | M.Sdy10956II (100% identity) | ATGCAT | M.Sdy59952ORF1360P |
| 1365 | DNA-binding transcriptional regulator Fis | |||
| 2500 | HNH endonuclease | |||
| 2505 | R | SdySWHE2ORF4090P (99% identity) | Sdy59952ORF2505P | |
| 2510 | 102 aa hypothetical protein | |||
| 13475 | drug/metabolite exporter YedA | |||
| 13480 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Sdy59952DcmP |
| 13485 | M | M.Spn7978DcmP (100% identity) | CCWGG | M.Sdy59952DcmP |
| 13490 | phosphohydrolase | |||
| 20415 | 28 aa hypothetical protein | |||
| 20420 | M | M.Sdy10956ORFEP (100% identity) | GATC | M.Sdy59952ORF20420P |
| 20425 | RusA family crossover junction | |||
| 20445 | 79 aa hypothetical protein | |||
| 20450 | M | M.Sdy10956ORFDP (100% identity) | A | M.Sdy59952ORF20450P |
| 20470 | 44 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20840 | cell filamentation protein Fic | |||
| 20845 | R | Eco49610GmrSDBP (54% identity) | Sdy59952GmrSDBP | |
| 20850 | IS4-like element IS4 family transposase | |||
| 20855 | R | Eco6968GmrSDP (69% identity) | Sdy59952GmrSDAP | |
| 20860 | class I SAM-dependent DNA methyltransferase | |||