Escherichia coli isolateD |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli isolateD RM systems
Ref: Lerminiaux,N. et al. unpublished
REBASE ref # 37599
| Sequence length: | GenBank #: | |
| Chromosome: | 4,758,695 bp | CP135488 |
| plasmid pIsolateD_A: | 148,746 bp | CP135489 |
REBASE acronym: EcoteD
Org_num: 72200
All begin RRL15_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5630 | IS1 family transposase | |||
| 5635 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoteDORF5645P |
| 5640 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoteDORF5645P |
| 5645 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoteDORF5645P |
| 5650 | integrase core domain-containing protein | |||
| plasmid pIsolateD_A | ||||
| 24115 | IS1-like element IS1A family transposase | |||
| 24120 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoteDORF24130P |
| 24125 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoteDORF24130P |
| 24130 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoteDORF24130P |
| 24135 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1835 | cell division protein DamX | |||
| 1840 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoteDDamP |
| 1845 | ribulose-phosphate 3-epimerase | |||
| 2460 | DUF2556 family protein | |||
| 2465 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoteDORF2465P |
| 2470 | DNA-binding transcriptional regulator Fis | |||
| 9320 | phosphohydrolase | |||
| 9325 | M | M.EcoS253DcmP (100% identity) | CCWGG | M.EcoteDDcmP |
| 9330 | V | V.SsoST152DcmP (100% identity) | CCWGG | V.EcoteDDcmP |
| 9335 | drug/metabolite exporter YedA | |||
| 15010 | phosphoadenosine phosphosulfate reductase family | |||
| 15015 | M | M.EcoS253ORF7075P (91% identity) | M.EcoteDORF15015P | |
| 15020 | TraR/DksA family transcriptional regulator | |||
| plasmid pIsolateD_A | ||||
| 24035 | 73 aa hypothetical protein | |||
| 24040 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoteDORF24040P |
| 24045 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13370 | isocitrate/isopropylmalate family dehydrogenase | |||
| 13375 | R | EmaE2C08McrCP (100% identity) | EcoteDMcrCP | |
| 13380 | R | EcosEC27McrBP (100% identity) | EcoteDMcrBP | |
| 13385 | recombinase family protein | |||