Escherichia coli isolateI |
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Putative Escherichia coli isolateI RM systems
Ref: Lerminiaux,N. et al. unpublished
REBASE ref # 37599
| Sequence length: | GenBank #: | |
| Chromosome: | 4,914,339 bp | CP135458 |
| plasmid pIsolateI_A: | 76,262 bp | CP135459 |
REBASE acronym: Eco135458
Org_num: 72063
All begin RRL07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18525 | type IV toxin-antitoxin system AbiEi family | |||
| 18530 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco135458ORF18535P |
| 18535 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco135458ORF18535P |
| 18540 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco135458ORF18535P |
| 18545 | ash family protein | |||
| 20345 | restriction endonuclease | |||
| 20350 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco135458ORF20350P |
| 20355 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco135458ORF20350P |
| 20360 | R | Eco867ORF23975P (100% identity) | RTACNNNNGTG | Eco135458ORF20350P |
| 20365 | endoribonuclease SymE | |||
| plasmid pIsolateI_A | ||||
| 24240 | type II toxin-antitoxin system Phd/YefM family | |||
| 24245 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.Eco135458ORF24245P |
| 24250 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.Eco135458ORF24245P |
| 24255 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | Eco135458ORF24245P |
| 24260 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1710 | cell division protein DamX | |||
| 1715 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco135458DamP |
| 1720 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco135458ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9405 | phosphohydrolase | |||
| 9410 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco135458DcmP |
| 9415 | V | V.Eco867DcmP (100% identity) | V.Eco135458DcmP | |
| 9420 | drug/metabolite exporter YedA | |||
| 12980 | DUF3927 family protein | |||
| 12995 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco135458ORF12995P |
| 13000 | TrmB family transcriptional regulator | |||
| 15280 | helix-turn-helix transcriptional regulator | |||
| 15285 | M | M.KpnYN1ORFGP (89% identity) | M.Eco135458ORF15285P | |
| 15290 | 71 aa hypothetical protein | |||
| plasmid pIsolateI_A | ||||
| 24310 | 103 aa hypothetical protein | |||
| 24315 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco135458ORF24315P |
| 24320 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20340 | BrnT family toxin | |||
| 20345 | R | Ecou021MrrP (100% identity) | Eco135458MrrP | |
| 20350 | class I SAM-dependent DNA methyltransferase | |||
| 20575 | AAA family ATPase | |||
| 20580 | R | EcosS9McrCP (100% identity) | Eco135458McrCP | |
| 20585 | Alw26I/Eco31I/Esp3I family type II restriction | |||