Escherichia coli TUM1880 |
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Putative Escherichia coli TUM1880 RM systems
Ref: Komori,K. et al. unpublished
REBASE ref # 37603
| Sequence length: | GenBank #: | |
| Chromosome: | 5,389,834 bp | CP135706 |
| plasmid pMTY1880_IncFII: | 70,737 bp | CP135707 |
REBASE acronym: Eco880
Org_num: 72055
All begin RS160_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3450 | transposase domain-containing protein | |||
| 3455 | M | M.Mmo48659ORF2735P (100% identity) | M.Eco880ORF3455P | |
| 3460 | AAA family ATPase | |||
| 3465 | S | S.Mmo48659ORF2735P (100% identity) | S.Eco880ORF3455P | |
| 3470 | R | EcoW004ORF12170P (100% identity) | Eco880ORF3455P | |
| 3475 | 60 aa hypothetical protein | |||
| 22255 | restriction endonuclease | |||
| 22260 | M | M.EmaC12ORF11130P (100% identity) | CGAYNNNNNNNTTC | M.Eco880ORF22260P |
| 22265 | S | S.EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | S.Eco880ORF22260P |
| 22270 | R | EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | Eco880ORF22260P |
| 22275 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1860 | cell division protein DamX | |||
| 1865 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco880DamP |
| 1870 | ribulose-phosphate 3-epimerase | |||
| 2425 | DUF2556 family protein | |||
| 2430 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco880ORF2430P |
| 2435 | DNA-binding transcriptional regulator Fis | |||
| 6455 | Com family DNA-binding transcriptional | |||
| 6460 | M | M.SenYU39ORF1896P (100% identity) | M.Eco880ORF6460P | |
| 6465 | ribosome-associated translation inhibitor RaiA | |||
| 10470 | phosphohydrolase | |||
| 10475 | M | M.SflWW1DcmP (100% identity) | CCWGG | M.Eco880DcmP |
| 10480 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco880DcmP |
| 10485 | drug/metabolite exporter YedA | |||
| 13165 | DUF977 family protein | |||
| 13170 | M | M.Ecoi029ORF11125P (100% identity) | M.Eco880ORF13170P | |
| 13175 | 60 aa hypothetical protein | |||
| 17820 | NinE family protein | |||
| 17825 | M | M.SflN97ORF15810P (100% identity) | GATC | M.Eco880ORF17825P |
| 17830 | recombination protein NinB | |||
| plasmid pMTY1880_IncFII | ||||
| 26990 | 97 aa hypothetical protein | |||
| 26995 | M | M.Ssop356ORFAP (100% identity) | M.Eco880ORF26995P | |
| 27000 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15430 | isocitrate/isopropylmalate family dehydrogenase | |||
| 15435 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco880ORF15435P |
| 15440 | site-specific DNA recombinase | |||
| 22250 | BrnT family toxin | |||
| 22255 | R | EcosEC21MrrP (100% identity) | Eco880MrrP | |
| 22260 | class I SAM-dependent DNA methyltransferase | |||