Escherichia coli 1588 |
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Putative Escherichia coli 1588 RM systems
Ref: Shropshire,W.C. et al. unpublished
REBASE ref # 36584
| Sequence length: | GenBank #: | |
| Chromosome: | 4,755,646 bp | CP134918 |
| plasmid pMB8775_1: | 94,044 bp | CP134919 |
| plasmid pMB8775_2: | 91,168 bp | CP134920 |
| plasmid pMB8775_3: | 57,676 bp | CP134921 |
REBASE acronym: Eco588
Org_num: 71909
All begin RNO65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9330 | IS1-like element IS1A family transposase | |||
| 9335 | R | EcosNDM5ORF9185P (100% identity) | Eco588ORF9335P | |
| 9340 | SprT family zinc-dependent metalloprotease | |||
| plasmid pMB8775_1 | ||||
| 23845 | IS1-like element IS1A family transposase | |||
| 23850 | M | M.EcoSEC14ORF22665P (100% identity) | M.Eco588ORF23850P | |
| 23855 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1650 | cell division protein DamX | |||
| 1655 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco588DamP |
| 1660 | ribulose-phosphate 3-epimerase | |||
| 2280 | DUF2556 family protein | |||
| 2285 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco588ORF2285P |
| 2290 | DNA-binding transcriptional regulator Fis | |||
| 9035 | phosphohydrolase | |||
| 9040 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco588DcmP |
| 9045 | V | V.EcoYJ4DcmP (100% identity) | V.Eco588DcmP | |
| 9050 | drug/metabolite exporter YedA | |||
| 12240 | DUF6378 domain-containing protein | |||
| 12245 | M | M.EcoMIN12ORF12655P (100% identity) | M.Eco588ORF12245P | |
| 12250 | 77 aa hypothetical protein | |||
| 13040 | DUF3927 family protein | |||
| 13055 | M | M.SsoCS14ORF10750P (100% identity) | A | M.Eco588ORF13055P |
| 13060 | TrmB family transcriptional regulator | |||
| 18305 | LexA family transcriptional regulator | |||
| 18310 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.Eco588ORF18310P |
| 18315 | PerC family transcriptional regulator | |||
| plasmid pMB8775_1 | ||||
| 23750 | 73 aa hypothetical protein | |||
| 23755 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco588ORF23755P |
| 23760 | 103 aa hypothetical protein | |||
| plasmid pMB8775_2 | ||||
| 23975 | 103 aa hypothetical protein | |||
| 23980 | M | M.EcoL725ORF24155P (99% identity) | M.Eco588ORF23980P | |
| 23985 | 73 aa hypothetical protein | |||
| plasmid pMB8775_3 | ||||
| 24385 | 137 aa hypothetical protein | |||
| 24390 | RM | Eco28E3C03ORF23475P (99% identity) | Eco588ORF24390P | |
| 24395 | mobilization protein MobX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pMB8775_3 | ||||
| 24620 | mobilization protein MobX | |||
| 24625 | R | SspS13ORF650P (100% identity) | Eco588ORF24630P | |
| 24630 | M | M.SspS13ORF650P (100% identity) | M.Eco588ORF24630P | |
| 24635 | 49 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18015 | IS3-like element IS3 family transposase | |||
| 18020 | R | Ecop10BGmrSDP (100% identity) | Eco588GmrSDP | |
| 18025 | 28 aa hypothetical protein | |||
| 20210 | HNH endonuclease | |||
| 20215 | R | Eco2aEMcrCP (100% identity) | Eco588McrCP | |
| 20220 | IS1-like element IS1A family transposase | |||