Escherichia coli 3320 |
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Putative Escherichia coli 3320 RM systems
Ref: Shropshire,W.C. et al. unpublished
REBASE ref # 36584
| Sequence length: | GenBank #: | |
| Chromosome: | 4,797,415 bp | CP134905 |
| plasmid pMB3134_2: | 93,722 bp | CP134907 |
REBASE acronym: Eco3320
Org_num: 71913
All begin RNQ06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19460 | DUF262 domain-containing protein | |||
| 19465 | M | M.EcoW03ORF14320P (100% identity) | M.Eco3320ORF19465P | |
| 19470 | S | S.EcoZ247ORF19790P (100% identity) | S.Eco3320ORF19465P | |
| 19475 | R | EcoW03ORF14320P (100% identity) | Eco3320ORF19465P | |
| 19480 | 237 aa hypothetical protein | |||
| 19990 | DUF600 family protein | |||
| 19995 | R | EcoW03ORF13795P (100% identity) | TGANNNNNNCTTT | Eco3320ORF20000P |
| 20000 | M | M.EcoW03ORF13795P (100% identity) | TGANNNNNNCTTT | M.Eco3320ORF20000P |
| 20005 | S | S.EcoW03ORF13795P (100% identity) | TGANNNNNNCTTT | S.Eco3320ORF20000P |
| 20010 | SIR2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1750 | cell division protein DamX | |||
| 1755 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco3320DamP |
| 1760 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 family protein | |||
| 2350 | M | M.EcosalpORF2760P (100% identity) | ATGCAT | M.Eco3320ORF2350P |
| 2355 | DNA-binding transcriptional regulator Fis | |||
| 5755 | TraR/DksA family transcriptional regulator | |||
| 5760 | M | M.EcoW03ORF4630P (100% identity) | GATC | M.Eco3320ORF5760P |
| 5765 | replication endonuclease | |||
| 14235 | NinE family protein | |||
| 14240 | M | M.Ecocs03ORF11080P (74% identity) | GATC | M.Eco3320ORF14240P |
| 14245 | recombination protein NinB | |||
| 15210 | replication endonuclease | |||
| 15215 | M | M.EcoW03ORF18570P (100% identity) | GATC | M.Eco3320ORF15215P |
| 15220 | DUF3850 domain-containing protein | |||
| 19710 | HNH endonuclease | |||
| 19715 | R | EcoW03ORF14070P (100% identity) | Eco3320ORF19715P | |
| 19720 | peptidase | |||
| plasmid pMB3134_2 | ||||
| 23915 | 103 aa hypothetical protein | |||
| 23920 | M | M.Sso866ORF27155P (100% identity) | M.Eco3320ORF23920P | |
| 23925 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19450 | cell filamentation protein Fic | |||
| ??? | R | EcoW03GmrSDP (100% identity) | Eco3320GmrSDP | |
| 19465 | class I SAM-dependent DNA methyltransferase | |||