Escherichia coli RIVM_C040348 |
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Putative Escherichia coli RIVM_C040348 RM systems
Ref: Hendrickx,A.P.A. unpublished
REBASE ref # 37550
Complete sequence: 5,256,457 bp
GenBank #: CP134716
REBASE acronym: Eco40348
Org_num: 71819
All begin RM370_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15785 | transcription factor | |||
| 15790 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.Eco40348ORF15790P |
| 15795 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S1.Eco40348ORF15790P |
| 15800 | toxin-antitoxin system toxin DNA ADP-ribosyl | |||
| 15805 | toxin-antitoxin system antitoxin DNA ADP-ribosyl | |||
| 15810 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco40348ORF15790P |
| 15815 | SprT family zinc-dependent metalloprotease | |||
| 21580 | DUF262 domain-containing HNH endonuclease family | |||
| 21585 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | Eco40348ORF21590P |
| 21590 | M | M.EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | M.Eco40348ORF21590P |
| 21595 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.Eco40348ORF21590P |
| 21600 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1720 | cell division protein DamX | |||
| 1725 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco40348DamP |
| 1730 | ribulose-phosphate 3-epimerase | |||
| 2320 | DUF2556 family protein | |||
| 2325 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco40348ORF2325P |
| 2330 | DNA-binding transcriptional regulator Fis | |||
| 6600 | ANR family transcriptional regulator | |||
| 6605 | M | M1.Ecoi127aORF1280P (100% identity) | M1.Eco40348ORF6605P | |
| 6610 | VRR-NUC domain-containing protein | |||
| 6615 | M | M.EcoSTEC640ORF7045P (100% identity) | M2.Eco40348ORF6605P | |
| 6620 | 106 aa hypothetical protein | |||
| 10210 | phosphohydrolase | |||
| 10215 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco40348DcmP |
| 10220 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco40348DcmP |
| 10225 | drug/metabolite exporter YedA | |||
| 21305 | phage holin, lambda family | |||
| 21310 | M | M.Ecoi127aORF3990P (100% identity) | M.Eco40348ORF21310P | |
| 21315 | 67 aa hypothetical protein | |||
| 21350 | LexA family transcriptional regulator | |||
| 21355 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco40348ORF21355P |
| 21360 | PerC family transcriptional regulator | |||
| 21770 | HNH endonuclease | |||
| 21775 | R | Ecoi127aORF4076P (100% identity) | Eco40348ORF21775P | |
| 21780 | peptidase | |||
| 22075 | conjugal transfer protein TraG N-terminal | |||
| 22080 | M | M.EcosS3ORF15775P (100% identity) | M.Eco40348ORF22080P | |
| 22085 | R | EcosS3ORF15775P (100% identity) | Eco40348ORF22080P | |
| 22090 | response regulator receiver domain | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14370 | NinE family protein | |||
| 14375 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco40348ORF14375P |
| 14380 | recombination protein NinB | |||