Escherichia coli TUM12368 |
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Putative Escherichia coli TUM12368 RM systems
Ref: Aoki,K. unpublished
REBASE ref # 37508
| Sequence length: | GenBank #: | |
| Chromosome: | 5,116,928 bp | CP134366 |
| plasmid pMTY12368_IncI1-I: | 84,532 bp | CP134369 |
| plasmid pMTY12368_pLF82: | 106,293 bp | CP134368 |
REBASE acronym: Eco368
Org_num: 71632
All begin RJ645_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4290 | transposase | |||
| 4295 | R | Ecoi012ORF18325P (99% identity) | CTANNNNNNCTTC | Eco368ORF4300P |
| 4300 | M | M.EcosEC2ORF410P (100% identity) | CTANNNNNNCTTC | M.Eco368ORF4300P |
| 4305 | S | S.EcosC41ORF22705P (100% identity) | CTANNNNNNCTTC | S.Eco368ORF4300P |
| 4310 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1885 | cell division protein DamX | |||
| 1890 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco368DamP |
| 1895 | ribulose-phosphate 3-epimerase | |||
| 2415 | DUF2556 family protein | |||
| 2420 | M | M.Ecoppa2ORF6235P (100% identity) | ATGCAT | M.Eco368ORF2420P |
| 2425 | DNA-binding transcriptional regulator Fis | |||
| 6905 | DUF1382 family protein | |||
| 6910 | M | M.EcoCBGORF22365P (99% identity) | M.Eco368ORF6910P | |
| 6915 | PerC family transcriptional regulator | |||
| 8025 | HNH endonuclease | |||
| 8030 | M | M.EcoS944ORF17230P (99% identity) | M.Eco368ORF8030P | |
| 8035 | phosphoadenosine phosphosulfate reductase family | |||
| 10230 | phosphohydrolase | |||
| 10235 | M | M.Ecoppa2DcmP (100% identity) | CCWGG | M.Eco368DcmP |
| 10240 | V | V.Ecoppa2DcmP (100% identity) | V.Eco368DcmP | |
| 10245 | drug/metabolite exporter YedA | |||
| 20810 | RM | EcoZ30ORF19095P (100% identity) | Eco368ORF20810P | |
| 20815 | DEAD/DEAH box helicase | |||
| 20855 | HNH endonuclease | |||
| 20860 | R | Ecoppa2ORF12035P (100% identity) | Eco368ORF20860P | |
| 20865 | 332 aa hypothetical protein | |||
| 22585 | LexA family transcriptional regulator | |||
| 22590 | M | M.Sso7924ORF2966P (99% identity) | GATC | M.Eco368ORF22590P |
| 22595 | PerC family transcriptional regulator | |||
| plasmid pMTY12368_IncI1-I | ||||
| 26470 | 70 aa hypothetical protein | |||
| 26475 | M | M.SenBR027ORFEP (100% identity) | SAY | M.Eco368ORF26475P |
| 26480 | 73 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pMTY12368_pLF82 | ||||
| 26250 | 76 aa hypothetical protein | |||
| 26255 | M | M.Sso524ORF460P (99% identity) | M.Eco368ORF26255P | |
| 26260 | 269 aa hypothetical protein | |||