Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C1-10-1-1 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C1-10-1-1 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,586,116 bp | CP125679 |
| plasmid pBACpAK-COL: | 21,523 bp | CP125678 |
| plasmid pD25466: | 115,296 bp | CP125677 |
REBASE acronym: Eco1011
Org_num: 71608
All begin QL114_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7700 | adenine/cytosine-specific restriction | |||
| 7705 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco1011ORF7710P |
| 7710 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco1011ORF7710P |
| 7715 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco1011ORF7710P |
| 7720 | endoribonuclease SymE | |||
| plasmid pBACpAK-COL | ||||
| 660 | M | M.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | M.Eco1011ORF660P |
| 665 | S | S.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | S.Eco1011ORF660P |
| 670 | R | Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | Eco1011ORF660P |
| 675 | ISL3-like element ISKpn25 family transposase | |||
| plasmid pD25466 | ||||
| 5 | ISL3-like element ISKpn25 family transposase | |||
| 10 | R | Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | Eco1011ORF20P |
| 15 | S | S.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | S.Eco1011ORF20P |
| 20 | M | M.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | M.Eco1011ORF20P |
| 25 | 71 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1460 | DUF1317 family protein | |||
| 1465 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco1011ORF1465P | |
| 1470 | DUF4060 family protein | |||
| 12705 | cell division protein DamX | |||
| 12710 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1011DamP |
| 12715 | ribulose-phosphate 3-epimerase | |||
| 13330 | DUF2556 family protein | |||
| 13335 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco1011ORF13335P |
| 13340 | DNA-binding transcriptional regulator Fis | |||
| 19870 | phosphohydrolase | |||
| 19875 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco1011DcmP |
| 19880 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco1011DcmP |
| 19885 | drug/metabolite exporter YedA | |||
| plasmid pD25466 | ||||
| 75 | 56 aa hypothetical protein | |||
| 80 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco1011ORF80P | |
| 85 | 73 aa hypothetical protein | |||
| 470 | incFII family plasmid replication initiator | |||
| 475 | M | M.SmaE28ORF26800P (43% identity) | M.Eco1011ORF475AP | |
| 480 | M | M.Eco257ORF22525BP (100% identity) | M.Eco1011ORF475BP | |
| 485 | 297 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2000 | isocitrate/isopropylmalate family dehydrogenase | |||
| 2005 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco1011ORF2005P |
| 2010 | site-specific DNA recombinase | |||
| 7695 | GTPase | |||
| 7700 | R | SenHNK130MrrP (100% identity) | Eco1011MrrP | |
| 7705 | type I restriction-modification system | |||
| 7720 | endoribonuclease SymE | |||
| 7725 | R | SenHNK130McrBP (100% identity) | Eco1011McrBP | |
| 7730 | R | SenHNK130McrCP (100% identity) | Eco1011McrCP | |
| 7735 | 978 aa hypothetical protein | |||