Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C1-10-1-2 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C1-10-1-2 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,586,105 bp | CP125676 |
| plasmid pD25466: | 115,297 bp | CP125674 |
REBASE acronym: Eco1012
Org_num: 71609
All begin QL118_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11285 | adenine/cytosine-specific restriction | |||
| 11290 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco1012ORF11295P |
| 11295 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco1012ORF11295P |
| 11300 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco1012ORF11295P |
| 11305 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1085 | phosphohydrolase | |||
| 1090 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco1012DcmP |
| 1095 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco1012DcmP |
| 1100 | drug/metabolite exporter YedA | |||
| 5055 | DUF1317 family protein | |||
| 5060 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco1012ORF5060P | |
| 5065 | DUF4060 family protein | |||
| 16290 | cell division protein DamX | |||
| 16295 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1012DamP |
| 16300 | ribulose-phosphate 3-epimerase | |||
| 16915 | DUF2556 family protein | |||
| 16920 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco1012ORF16920P |
| 16925 | DNA-binding transcriptional regulator Fis | |||
| plasmid pD25466 | ||||
| 150 | incFII family plasmid replication initiator | |||
| 155 | M | M.SmaE28ORF26800P (43% identity) | M.Eco1012ORF155AP | |
| 160 | M | M.Eco257ORF22525BP (100% identity) | M.Eco1012ORF155BP | |
| 165 | 297 aa hypothetical protein | |||
| 410 | 56 aa hypothetical protein | |||
| 415 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco1012ORF415P | |
| 420 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5595 | isocitrate/isopropylmalate family dehydrogenase | |||
| 5600 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco1012ORF5600P |
| 5605 | site-specific DNA recombinase | |||
| 11280 | GTPase | |||
| 11285 | R | SenHNK130MrrP (100% identity) | Eco1012MrrP | |
| 11290 | type I restriction-modification system | |||
| 11305 | endoribonuclease SymE | |||
| 11310 | R | SenHNK130McrBP (100% identity) | Eco1012McrBP | |
| 11315 | R | SenHNK130McrCP (100% identity) | Eco1012McrCP | |
| 11320 | 978 aa hypothetical protein | |||