Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-16hr-CCT-27- 7 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-16hr-CCT-27- 7 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,586,104 bp | CP125688 |
| plasmid pD25466: | 115,296 bp | CP125690 |
REBASE acronym: Eco277
Org_num: 71618
All begin QL120_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10975 | endoribonuclease SymE | |||
| 10980 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco277ORF10985P |
| 10985 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco277ORF10985P |
| 10990 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco277ORF10985P |
| 10995 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5365 | DNA-binding transcriptional regulator Fis | |||
| 5370 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco277ORF5370P |
| 5375 | DUF2556 family protein | |||
| 5990 | ribulose-phosphate 3-epimerase | |||
| 5995 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco277DamP |
| 6000 | cell division protein DamX | |||
| 17220 | DUF4060 family protein | |||
| 17225 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco277ORF17225P | |
| 17230 | DUF1317 family protein | |||
| 21190 | drug/metabolite exporter YedA | |||
| 21195 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco277DcmP |
| 21200 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco277DcmP |
| 21205 | phosphohydrolase | |||
| plasmid pD25466 | ||||
| 22505 | incFII family plasmid replication initiator | |||
| 22510 | M | M.SmaKC004ORF48960P (93% identity) | M.Eco277ORF22510P | |
| 22515 | 297 aa hypothetical protein | |||
| 22760 | 56 aa hypothetical protein | |||
| 22765 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco277ORF22765P | |
| 22770 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10960 | 978 aa hypothetical protein | |||
| 10965 | R | SenHNK130McrCP (100% identity) | Eco277McrCP | |
| 10970 | R | SenHNK130McrBP (100% identity) | Eco277McrBP | |
| 10975 | endoribonuclease SymE | |||
| 10990 | type I restriction-modification system | |||
| 10995 | R | SenHNK130MrrP (100% identity) | Eco277MrrP | |
| 11000 | GTPase | |||
| 16680 | site-specific DNA recombinase | |||
| 16685 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco277ORF16685P |
| 16690 | isocitrate/isopropylmalate family dehydrogenase | |||