Escherichia coli DH5-alpha-pD25466-pBACpAK-KAN-FM3-C3-200-2 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-KAN-FM3-C3-200-2 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,592,949 bp | CP125702 |
| plasmid pD25466: | 115,304 bp | CP125703 |
REBASE acronym: Eco02
Org_num: 71619
All begin QL126_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17530 | endoribonuclease SymE | |||
| 17535 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco02ORF17540P |
| 17540 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco02ORF17540P |
| 17545 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco02ORF17540P |
| 17550 | adenine/cytosine-specific restriction | |||
| 22375 | cold-shock protein | |||
| 22380 | M | M.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | M.Eco02ORF22380P |
| 22385 | S | S.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | S1.Eco02ORF22380P |
| 22390 | R | Eco02ORF23120P (100% identity) | ACGNNNNNNCTG | Eco02ORF22380P |
| 22395 | ISL3-like element ISKpn25 family transposase | |||
| plasmid pD25466 | ||||
| 22400 | ISL3-like element ISKpn25 family transposase | |||
| 22405 | R | Eco02ORF23120P (100% identity) | ACGNNNNNNCTG | Eco02ORF22415P |
| 22410 | S | S.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | S.Eco02ORF22415P |
| 22415 | M | M.Sen42919ORF11180P (100% identity) | ACGNNNNNNCTG | M.Eco02ORF22415P |
| 22420 | 71 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1400 | DUF4060 family protein | |||
| 1405 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco02ORF1405P | |
| 1410 | DUF1317 family protein | |||
| 5370 | drug/metabolite exporter YedA | |||
| 5375 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco02DcmP |
| 5380 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco02DcmP |
| 5385 | phosphohydrolase | |||
| 11920 | DNA-binding transcriptional regulator Fis | |||
| 11925 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco02ORF11925P |
| 11930 | DUF2556 family protein | |||
| 12545 | ribulose-phosphate 3-epimerase | |||
| 12550 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco02DamP |
| 12555 | cell division protein DamX | |||
| plasmid pD25466 | ||||
| 22470 | 56 aa hypothetical protein | |||
| 22475 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco02ORF22475P | |
| 22480 | 73 aa hypothetical protein | |||
| 22865 | incFII family plasmid replication initiator | |||
| 22870 | M | M.SmaKC004ORF48960P (93% identity) | M.Eco02ORF22870P | |
| 22875 | 297 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 860 | site-specific DNA recombinase | |||
| 865 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco02ORF865P |
| 870 | isocitrate/isopropylmalate family dehydrogenase | |||
| 17515 | 978 aa hypothetical protein | |||
| 17520 | R | SenHNK130McrCP (100% identity) | Eco02McrCP | |
| 17525 | R | SenHNK130McrBP (100% identity) | Eco02McrBP | |
| 17530 | endoribonuclease SymE | |||
| 17545 | type I restriction-modification system | |||
| 17550 | R | SenHNK130MrrP (100% identity) | Eco02MrrP | |
| 17555 | GTPase | |||