Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C1-10-1-5 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C1-10-1-5 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,586,108 bp | CP125706 |
| plasmid pD25466: | 115,299 bp | CP125707 |
REBASE acronym: Eco1015
Org_num: 71610
All begin QL125_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15295 | endoribonuclease SymE | |||
| 15300 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco1015ORF15305P |
| 15305 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco1015ORF15305P |
| 15310 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco1015ORF15305P |
| 15315 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3115 | drug/metabolite exporter YedA | |||
| 3120 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco1015DcmP |
| 3125 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco1015DcmP |
| 3130 | phosphohydrolase | |||
| 9675 | DNA-binding transcriptional regulator Fis | |||
| 9680 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco1015ORF9680P |
| 9685 | DUF2556 family protein | |||
| 10300 | ribulose-phosphate 3-epimerase | |||
| 10305 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1015DamP |
| 10310 | cell division protein DamX | |||
| 21530 | DUF4060 family protein | |||
| 21535 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco1015ORF21535P | |
| 21540 | DUF1317 family protein | |||
| plasmid pD25466 | ||||
| 22630 | 56 aa hypothetical protein | |||
| 22635 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco1015ORF22635P | |
| 22640 | 73 aa hypothetical protein | |||
| 23025 | incFII family plasmid replication initiator | |||
| 23030 | M | M.SmaKC004ORF48960P (93% identity) | M.Eco1015ORF23030P | |
| 23035 | 297 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15280 | 978 aa hypothetical protein | |||
| 15285 | R | SenHNK130McrCP (100% identity) | Eco1015McrCP | |
| 15290 | R | SenHNK130McrBP (100% identity) | Eco1015McrBP | |
| 15295 | endoribonuclease SymE | |||
| 15310 | type I restriction-modification system | |||
| 15315 | R | SenHNK130MrrP (100% identity) | Eco1015MrrP | |
| 15320 | GTPase | |||
| 20990 | site-specific DNA recombinase | |||
| 20995 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco1015ORF20995P |
| 21000 | isocitrate/isopropylmalate family dehydrogenase | |||