Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-10-1-6 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-10-1-6 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,582,644 bp | CP125715 |
| plasmid pD25466: | 115,295 bp | CP125716 |
REBASE acronym: Eco016
Org_num: 71615
All begin QL116_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15920 | endoribonuclease SymE | |||
| 15925 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco016ORF15930P |
| 15930 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco016ORF15930P |
| 15935 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco016ORF15930P |
| 15940 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3750 | drug/metabolite exporter YedA | |||
| 3755 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco016DcmP |
| 3760 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco016DcmP |
| 3765 | phosphohydrolase | |||
| 10305 | DNA-binding transcriptional regulator Fis | |||
| 10310 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco016ORF10310P |
| 10315 | DUF2556 family protein | |||
| 10930 | ribulose-phosphate 3-epimerase | |||
| 10935 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco016DamP |
| 10940 | cell division protein DamX | |||
| 22155 | DUF4060 family protein | |||
| 22160 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco016ORF22160P | |
| 22165 | DUF1317 family protein | |||
| plasmid pD25466 | ||||
| 22660 | 73 aa hypothetical protein | |||
| 22665 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco016ORF22665P | |
| 22670 | 56 aa hypothetical protein | |||
| 22915 | 297 aa hypothetical protein | |||
| 22920 | M | M.SmaKC004ORF48960P (93% identity) | M.Eco016ORF22920P | |
| 22925 | incFII family plasmid replication initiator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15905 | 978 aa hypothetical protein | |||
| 15910 | R | SenHNK130McrCP (100% identity) | Eco016McrCP | |
| 15915 | R | SenHNK130McrBP (100% identity) | Eco016McrBP | |
| 15920 | endoribonuclease SymE | |||
| 15935 | type I restriction-modification system | |||
| 15940 | R | SenHNK130MrrP (100% identity) | Eco016MrrP | |
| 15945 | GTPase | |||
| 21615 | site-specific DNA recombinase | |||
| 21620 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco016ORF21620P |
| 21625 | isocitrate/isopropylmalate family dehydrogenase | |||