Escherichia fergusonii 22C037LT |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia fergusonii 22C037LT RM systems
Ref: Kakita,T. et al. unpublished
REBASE ref # 37455
| Sequence length: | GenBank #: | |
| Chromosome: | 4,541,776 bp | AP028842 |
| plasmid p22C037LT2: | 115,846 bp | AP028844 |
| plasmid p22C037LT3: | 94,593 bp | AP028845 |
REBASE acronym: Efe7LT
Org_num: 71419
All begin Ef22C037LT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 32790 | 48 aa hypothetical protein | |||
| 32800 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.Efe7LTORF32810P |
| 32810 | M | M.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | M.Efe7LTORF32810P |
| 32820 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | Efe7LTORF32810P |
| 32830 | 74 aa hypothetical protein | |||
| 35030 | 119 aa hypothetical protein | |||
| 35040 | R | Efe9LTORF34980P (100% identity) | Efe7LTORF35050P | |
| 35050 | M | M.SflTORF4636P (98% identity) | M.Efe7LTORF35050P | |
| 35060 | S | S.Efe9LTORF34980P (100% identity) | S.Efe7LTORF35050P | |
| 35070 | endoribonuclease SymE | |||
| plasmid p22C037LT2 | ||||
| 43440 | 168 aa hypothetical protein | |||
| 43450 | R | Efe9LTORF43980P (100% identity) | GAGNNNNNRTGA | Efe7LTORF43470P |
| 43460 | S | S.Efe6LTORF43530P (100% identity) | GAGNNNNNRTGA | S.Efe7LTORF43470P |
| 43470 | M | M.Efe6LTORF43530P (100% identity) | GAGNNNNNRTGA | M.Efe7LTORF43470P |
| 43480 | 75 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2260 | bifunctional isocitrate dehydrogenase | |||
| 2270 | M | M.EfeTORF2210P (100% identity) | CCWGG | M.Efe7LTORF2270P |
| 2280 | glyoxylate bypass operon transcriptional | |||
| 25410 | protein NinF | |||
| 25420 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Efe7LTORF25420P |
| 25430 | 200 aa hypothetical protein | |||
| 35220 | anti-phage ZorAB system protein ZorA | |||
| 35230 | M | M.Efe9LTDndBP (100% identity) | M.Efe7LTDndBP | |
| 35240 | DNA phosphorothioation system sulfurtransferase | |||
| 35230 | DNA sulfur modification protein DndB | |||
| 35240 | M | M.Efe9LTDndCP (100% identity) | M.Efe7LTDndCP | |
| 35250 | DNA sulfur modification protein DndD | |||
| 35240 | DNA phosphorothioation system sulfurtransferase | |||
| 35250 | M | M.Efe9LTDndDP (100% identity) | M.Efe7LTDndDP | |
| 35260 | 117 aa hypothetical protein | |||
| 35250 | DNA sulfur modification protein DndD | |||
| 35260 | M | M.Efe9LTDndEP (100% identity) | M.Efe7LTDndEP | |
| 35270 | DGQHR domain-containing protein | |||
| 35280 | 174 aa hypothetical protein | |||
| 35290 | R | Efe9LTDptHP (100% identity) | Efe7LTDptHP | |
| 35300 | 440 aa hypothetical protein | |||
| 35290 | 1695 aa hypothetical protein | |||
| 35300 | R | Efe9LTDptGP (100% identity) | Efe7LTDptGP | |
| 35310 | 549 aa hypothetical protein | |||
| 35300 | 440 aa hypothetical protein | |||
| 35310 | R | Efe9LTDptFP (100% identity) | Efe7LTDptFP | |
| 35320 | integrase arm-type DNA-binding domain-containing | |||
| 36580 | DNA-binding transcriptional regulator Fis | |||
| 36590 | M | M.EfeTORF37040P (100% identity) | ATGCAT | M.Efe7LTORF36590P |
| 36600 | DUF2556 family protein | |||
| 37570 | ribulose-phosphate 3-epimerase | |||
| 37580 | M | M.EfeEF04DamP (100% identity) | GATC | M.Efe7LTDamP |
| 37590 | cell division protein DamX | |||
| plasmid p22C037LT2 | ||||
| 44240 | 97 aa hypothetical protein | |||
| 44250 | M | M.Efe9LTORF44210P (100% identity) | M.Efe7LTORF44250P | |
| 44260 | recombination-associated protein RdgC | |||
| plasmid p22C037LT3 | ||||
| 44760 | DUF1281 domain-containing protein | |||
| 44770 | M | M.SspPIBORF23080P (100% identity) | M.Efe7LTORF44770P | |
| 44780 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 35070 | endoribonuclease SymE | |||
| 35080 | R | Efe9LTGmrSDP (100% identity) | Efe7LTGmrSDP | |
| 35090 | DUF1127 domain-containing protein | |||
| 35140 | DUF445 domain-containing protein | |||
| 35160 | R | Efe9LTMrrP (100% identity) | Efe7LTMrrP | |
| 35170 | 228 aa hypothetical protein | |||