Escherichia fergusonii 18B233LT |
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Putative Escherichia fergusonii 18B233LT RM systems
Ref: Kakita,T. et al. unpublished
REBASE ref # 37455
| Sequence length: | GenBank #: | |
| Chromosome: | 4,492,362 bp | AP028822 |
| plasmid p18B233LT1: | 116,758 bp | AP028823 |
| plasmid p18B233LT3: | 97,758 bp | AP028825 |
REBASE acronym: Efe3LT
Org_num: 71415
All begin Ef18B233LT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 32180 | 48 aa hypothetical protein | |||
| 32190 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.Efe3LTORF32200P |
| 32200 | M | M.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | M.Efe3LTORF32200P |
| 32210 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | Efe3LTORF32200P |
| 32220 | 74 aa hypothetical protein | |||
| 34430 | 119 aa hypothetical protein | |||
| 34440 | R | Efe9LTORF34980P (100% identity) | Efe3LTORF34450P | |
| 34450 | M | M.SflTORF4636P (98% identity) | M.Efe3LTORF34450P | |
| 34460 | S | S.Efe9LTORF34980P (100% identity) | S.Efe3LTORF34450P | |
| 34470 | endoribonuclease SymE | |||
| plasmid p18B233LT1 | ||||
| 41910 | 75 aa hypothetical protein | |||
| 41920 | M | M.Efe7LTORF43470P (100% identity) | GAGNNNNNRTGA | M.Efe3LTORF41920P |
| 41930 | S | S.Efe9LTORF43980P (100% identity) | GAGNNNNNRTGA | S.Efe3LTORF41920P |
| 41940 | R | Efe9LTORF43980P (100% identity) | GAGNNNNNRTGA | Efe3LTORF41920P |
| 41950 | 168 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2240 | bifunctional isocitrate dehydrogenase | |||
| 2250 | M | M.EfeTORF2210P (100% identity) | CCWGG | M.Efe3LTORF2250P |
| 2260 | glyoxylate bypass operon transcriptional | |||
| 34610 | anti-phage ZorAB system protein ZorA | |||
| 34620 | M | M.Efe9LTDndBP (100% identity) | M.Efe3LTDndBP | |
| 34630 | DNA phosphorothioation system sulfurtransferase | |||
| 34620 | DNA sulfur modification protein DndB | |||
| 34630 | M | M.Efe9LTDndCP (100% identity) | M.Efe3LTDndCP | |
| 34640 | DNA sulfur modification protein DndD | |||
| 34630 | DNA phosphorothioation system sulfurtransferase | |||
| 34640 | M | M.Efe9LTDndDP (100% identity) | M.Efe3LTDndDP | |
| 34650 | 117 aa hypothetical protein | |||
| 34640 | DNA sulfur modification protein DndD | |||
| 34650 | M | M.Efe9LTDndEP (100% identity) | M.Efe3LTDndEP | |
| 34660 | DGQHR domain-containing protein | |||
| 34670 | 174 aa hypothetical protein | |||
| 34680 | R | Efe9LTDptHP (100% identity) | Efe3LTDptHP | |
| 34690 | 440 aa hypothetical protein | |||
| 34680 | 1695 aa hypothetical protein | |||
| 34690 | R | Efe9LTDptGP (100% identity) | Efe3LTDptGP | |
| 34700 | 549 aa hypothetical protein | |||
| 34690 | 440 aa hypothetical protein | |||
| 34700 | R | Efe9LTDptFP (100% identity) | Efe3LTDptFP | |
| 34710 | integrase arm-type DNA-binding domain-containing | |||
| 35970 | DNA-binding transcriptional regulator Fis | |||
| 35980 | M | M.EfeTORF37040P (100% identity) | ATGCAT | M.Efe3LTORF35980P |
| 35990 | DUF2556 family protein | |||
| 36960 | ribulose-phosphate 3-epimerase | |||
| 36970 | M | M.EfeEF04DamP (100% identity) | GATC | M.Efe3LTDamP |
| 36980 | cell division protein DamX | |||
| plasmid p18B233LT1 | ||||
| 42140 | 57 aa hypothetical protein | |||
| 42150 | M | M.Efe9LTORF44210P (100% identity) | M.Efe3LTORF42150P | |
| 42160 | recombination-associated protein RdgC | |||
| plasmid p18B233LT3 | ||||
| 43910 | DUF1281 domain-containing protein | |||
| 43920 | M | M.SspPIBORF23080P (100% identity) | M.Efe3LTORF43920P | |
| 43930 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 34470 | endoribonuclease SymE | |||
| 34480 | R | Efe9LTGmrSDP (100% identity) | Efe3LTGmrSDP | |
| 34490 | DUF1127 domain-containing protein | |||
| 34530 | DUF445 domain-containing protein | |||
| 34550 | R | Efe9LTMrrP (100% identity) | Efe3LTMrrP | |
| 34560 | 228 aa hypothetical protein | |||